# This file is the result of combining several RDB files, specifically # T0642.t04.dssp-ebghstl.rdb (weight 1.53986) # T0642.t04.stride-ebghtl.rdb (weight 1.24869) # T0642.t04.str2.rdb (weight 1.54758) # T0642.t04.alpha.rdb (weight 0.659012) # These files were combined by translating their predictions into EHL # predictions with tables generated by compare-real, and then combining # those predictions with weights proportional to their mutual information # with the EHL alphabet. The comments from the individual files follow. # # Comments from T0642.t04.dssp-ebghstl.rdb # ============================================ # TARGET T0642 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0642.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1 # # ============================================ # Comments from T0642.t04.stride-ebghtl.rdb # ============================================ # TARGET T0642 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0642.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1 # # ============================================ # Comments from T0642.t04.str2.rdb # ============================================ # TARGET T0642 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0642.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1 # # ============================================ # Comments from T0642.t04.alpha.rdb # ============================================ # TARGET T0642 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-alpha-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 ABCDEFGHIST ) # The input amino acid frequencies were determined from # alignment T0642.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1 # # ============================================ Pos AA E H C 10N 1S 5N 5N 5N 1 M 0.1132 0.1589 0.7279 2 D 0.1081 0.2194 0.6725 3 E 0.0916 0.4937 0.4147 4 A 0.1146 0.4521 0.4333 5 R 0.1422 0.3825 0.4753 6 C 0.1575 0.1912 0.6513 7 A 0.1296 0.1137 0.7567 8 S 0.0858 0.0328 0.8814 9 P 0.0368 0.2839 0.6792 10 E 0.0487 0.3201 0.6312 11 R 0.0782 0.2709 0.6508 12 S 0.1108 0.1579 0.7313 13 T 0.1454 0.1680 0.6866 14 E 0.2604 0.1735 0.5661 15 R 0.4280 0.1005 0.4716 16 R 0.6932 0.0567 0.2501 17 I 0.8467 0.0319 0.1213 18 F 0.8821 0.0224 0.0955 19 I 0.8617 0.0229 0.1154 20 C 0.6451 0.0477 0.3072 21 N 0.3269 0.0651 0.6080 22 E 0.2618 0.1314 0.6068 23 W 0.3077 0.1314 0.5610 24 S 0.3159 0.1298 0.5543 25 Y 0.2720 0.2008 0.5272 26 E 0.2114 0.2126 0.5761 27 S 0.1796 0.2224 0.5981 28 T 0.1337 0.2709 0.5955 29 E 0.1026 0.4632 0.4342 30 R 0.0788 0.5405 0.3807 31 D 0.0682 0.5713 0.3605 32 A 0.0514 0.7513 0.1973 33 Y 0.0667 0.7739 0.1594 34 W 0.0833 0.7671 0.1496 35 E 0.0930 0.7588 0.1482 36 R 0.1048 0.7225 0.1727 37 E 0.0916 0.7034 0.2049 38 L 0.1030 0.6257 0.2713 39 E 0.1030 0.5053 0.3917 40 A 0.0989 0.3948 0.5063 41 S 0.0848 0.2585 0.6567 42 E 0.0456 0.4308 0.5236 43 D 0.0706 0.3563 0.5731 44 T 0.0788 0.4462 0.4750 45 H 0.1127 0.4412 0.4460 46 E 0.1893 0.4444 0.3663 47 L 0.2062 0.4398 0.3540 48 A 0.1862 0.3213 0.4926 49 S 0.1656 0.2434 0.5910 50 T 0.1313 0.2634 0.6052 51 S 0.0814 0.5563 0.3623 52 E 0.1138 0.5671 0.3190 53 Q 0.1816 0.5391 0.2792 54 I 0.2146 0.4668 0.3186 55 N 0.1646 0.3045 0.5308 56 T 0.1226 0.3096 0.5678 57 H 0.1185 0.3743 0.5072 58 E 0.1182 0.3761 0.5057 59 N 0.1553 0.3236 0.5211 60 I 0.1951 0.3504 0.4545 61 N 0.1647 0.2870 0.5483 62 T 0.1551 0.3085 0.5364 63 H 0.1949 0.2527 0.5524 64 C 0.2039 0.1652 0.6309 65 A 0.1543 0.0957 0.7500 66 S 0.0991 0.0398 0.8611 67 P 0.0840 0.0414 0.8745 68 P 0.1029 0.1171 0.7800 69 L 0.1581 0.1868 0.6551 70 E 0.2056 0.1698 0.6246 71 A 0.1565 0.1915 0.6520 72 S 0.1343 0.1566 0.7090 73 E 0.0812 0.1672 0.7516 74 G 0.0753 0.0844 0.8403 75 E 0.1982 0.0775 0.7243 76 T 0.3218 0.0755 0.6027 77 R 0.2472 0.1128 0.6400 78 E 0.1985 0.1233 0.6782 79 S 0.1927 0.1183 0.6890 80 T 0.1466 0.1632 0.6902 81 E 0.1204 0.2477 0.6319 82 D 0.1173 0.2200 0.6627 83 A 0.0492 0.5294 0.4214 84 N 0.0513 0.4313 0.5174 85 D 0.0863 0.3760 0.5378 86 L 0.0927 0.4446 0.4627 87 E 0.1167 0.3969 0.4864 88 T 0.1533 0.3489 0.4978 89 A 0.1281 0.2521 0.6199 90 S 0.1119 0.1807 0.7074 91 S 0.0878 0.2499 0.6622 92 E 0.0730 0.3883 0.5387 93 S 0.0902 0.3708 0.5389 94 S 0.1030 0.3550 0.5420 95 M 0.1168 0.3554 0.5279 96 E 0.1066 0.3410 0.5525 97 N 0.1041 0.2226 0.6733 98 T 0.0784 0.2012 0.7204 99 D 0.0547 0.3659 0.5794 100 E 0.0438 0.6432 0.3130 101 T 0.0585 0.7011 0.2404 102 E 0.0744 0.7574 0.1682 103 R 0.1133 0.7235 0.1632 104 M 0.1586 0.6784 0.1630 105 I 0.1410 0.6290 0.2300 106 N 0.1069 0.4928 0.4003 107 E 0.0808 0.4592 0.4600 108 T 0.1024 0.3840 0.5136 109 H 0.1138 0.3105 0.5757 110 E 0.1069 0.3913 0.5018 111 E 0.1450 0.3304 0.5246 112 S 0.1608 0.2596 0.5796 113 T 0.1798 0.2708 0.5495 114 S 0.2809 0.2606 0.4585 115 C 0.3790 0.2569 0.3641 116 I 0.4585 0.2310 0.3105 117 E 0.3948 0.1991 0.4061 118 N 0.3341 0.0806 0.5853 119 T 0.5936 0.0340 0.3724 120 I 0.8581 0.0117 0.1302 121 F 0.9062 0.0095 0.0844 122 I 0.9068 0.0093 0.0839 123 C 0.8494 0.0157 0.1349 124 C 0.6377 0.0301 0.3322 125 E 0.3030 0.0912 0.6058 126 N 0.1586 0.0783 0.7631 127 T 0.1866 0.1052 0.7082 128 E 0.2509 0.1352 0.6139 129 R 0.3162 0.1336 0.5502 130 S 0.3155 0.1190 0.5655 131 T 0.3898 0.1122 0.4981 132 H 0.5412 0.1102 0.3486 133 I 0.5784 0.1318 0.2898 134 S 0.5056 0.1396 0.3548 135 T 0.3368 0.1989 0.4642 136 A 0.2153 0.2403 0.5444 137 R 0.1222 0.1644 0.7133 138 G 0.1013 0.1096 0.7891 139 E 0.2342 0.0949 0.6710 140 T 0.4369 0.1099 0.4532 141 I 0.3308 0.3384 0.3308 142 S 0.2765 0.3967 0.3268 143 D 0.2660 0.4767 0.2573 144 I 0.3487 0.4569 0.1944 145 F 0.4336 0.3952 0.1711 146 F 0.4647 0.3428 0.1925 147 E 0.4015 0.3249 0.2736 148 R 0.3013 0.3223 0.3764 149 E 0.1692 0.3128 0.5181 150 N 0.1371 0.1952 0.6677 151 T 0.1406 0.2100 0.6494 152 A 0.1208 0.2927 0.5865 153 N 0.0997 0.2432 0.6571 154 D 0.1008 0.2534 0.6458 155 H 0.1385 0.2678 0.5937 156 A 0.2131 0.1899 0.5970 157 S 0.2853 0.1829 0.5318 158 V 0.3126 0.3142 0.3732 159 E 0.3226 0.3114 0.3660 160 R 0.3344 0.2530 0.4126 161 Y 0.2513 0.1280 0.6207 162 S 0.1268 0.0214 0.8519 163 P 0.0414 0.2538 0.7049 164 E 0.0943 0.2521 0.6536 165 C 0.4985 0.1962 0.3053 166 I 0.7783 0.0691 0.1525 167 F 0.8416 0.0521 0.1063 168 I 0.7879 0.0682 0.1438 169 C 0.5223 0.0785 0.3992 170 S 0.1642 0.1176 0.7182 171 H 0.0876 0.0984 0.8140 172 A 0.0816 0.0606 0.8578 173 P 0.0744 0.2591 0.6665 174 E 0.1757 0.4023 0.4220 175 W 0.4647 0.3180 0.2172 176 I 0.6402 0.2402 0.1196 177 L 0.6721 0.2161 0.1118 178 L 0.6183 0.2135 0.1682 179 C 0.5090 0.1819 0.3091 180 H 0.3354 0.2117 0.4529 181 E 0.3100 0.1974 0.4926 182 C 0.3839 0.1282 0.4879 183 K 0.4815 0.1090 0.4095 184 I 0.5817 0.0915 0.3268 185 T 0.4938 0.1070 0.3993 186 A 0.3733 0.1502 0.4765 187 T 0.3177 0.1684 0.5139 188 T 0.2538 0.3039 0.4424 189 H 0.2092 0.4226 0.3682 190 E 0.2411 0.4575 0.3014 191 M 0.1706 0.6191 0.2102 192 E 0.1582 0.6627 0.1791 193 E 0.1639 0.6403 0.1957 194 T 0.1450 0.6453 0.2098 195 I 0.1461 0.5637 0.2902 196 N 0.0788 0.3356 0.5856 197 G 0.0625 0.1459 0.7916 198 I 0.1410 0.0726 0.7864 199 N 0.1271 0.0253 0.8475 200 P 0.0425 0.3944 0.5631 201 A 0.1054 0.3998 0.4948 202 C 0.4299 0.3100 0.2601 203 I 0.7329 0.1342 0.1329 204 F 0.7616 0.1240 0.1144 205 I 0.7117 0.1455 0.1428 206 C 0.4448 0.2076 0.3477 207 G 0.1980 0.1527 0.6493 208 R 0.2308 0.2850 0.4842 209 V 0.2365 0.4741 0.2893 210 E 0.1806 0.5216 0.2977 211 H 0.1261 0.6289 0.2450 212 A 0.0767 0.7365 0.1868 213 H 0.0575 0.7500 0.1925 214 A 0.0580 0.7571 0.1850 215 L 0.0585 0.7561 0.1853 216 A 0.0438 0.7530 0.2032 217 S 0.0443 0.6902 0.2655 218 T 0.0474 0.7404 0.2122 219 W 0.0617 0.8031 0.1352 220 C 0.0808 0.8094 0.1098 221 F 0.0871 0.8252 0.0877 222 I 0.0756 0.8447 0.0798 223 N 0.0570 0.8463 0.0966 224 A 0.0564 0.8365 0.1071 225 L 0.0814 0.7919 0.1267 226 I 0.0963 0.7392 0.1645 227 S 0.0931 0.6771 0.2297 228 T 0.0784 0.6499 0.2717 229 S 0.1011 0.6521 0.2468 230 I 0.0989 0.7526 0.1485 231 T 0.1227 0.7488 0.1286 232 A 0.1473 0.7382 0.1145 233 L 0.1821 0.6723 0.1455 234 Y 0.2294 0.5358 0.2348 235 A 0.1315 0.5901 0.2785 236 N 0.0815 0.4702 0.4482 237 D 0.0932 0.4024 0.5044 238 F 0.1244 0.4145 0.4611 239 R 0.1380 0.3973 0.4647 240 A 0.1105 0.4234 0.4661 241 N 0.0969 0.2870 0.6161 242 C 0.1604 0.2185 0.6211 243 E 0.1922 0.3017 0.5062 244 W 0.2165 0.3306 0.4529 245 E 0.2222 0.3042 0.4736 246 R 0.1788 0.5237 0.2976 247 E 0.2409 0.4653 0.2937 248 E 0.4232 0.3426 0.2342 249 L 0.6304 0.2243 0.1453 250 I 0.7003 0.1662 0.1335 251 M 0.7429 0.1293 0.1278 252 I 0.6715 0.1207 0.2077 253 N 0.4515 0.0932 0.4553 254 A 0.2417 0.1422 0.6161 255 T 0.1744 0.1775 0.6481 256 E 0.1245 0.1940 0.6815 257 D 0.1549 0.1128 0.7322 258 I 0.1788 0.0491 0.7720 259 N 0.1098 0.0133 0.8769 260 P 0.0149 0.6884 0.2967 261 R 0.0218 0.7057 0.2725 262 E 0.0776 0.7273 0.1951 263 L 0.2451 0.6314 0.1235 264 I 0.3843 0.5148 0.1009 265 M 0.4897 0.4065 0.1038 266 I 0.4813 0.3363 0.1824 267 N 0.3368 0.2623 0.4009 268 A 0.1303 0.6256 0.2442 269 R 0.1678 0.6178 0.2144 270 Y 0.1881 0.6145 0.1973 271 M 0.2074 0.5956 0.1970 272 A 0.1902 0.5572 0.2527 273 T 0.1668 0.5439 0.2893 274 C 0.1497 0.4475 0.4028 275 H 0.1152 0.3259 0.5589 276 E 0.0751 0.2662 0.6587 277 S 0.0644 0.1980 0.7376 278 S 0.0841 0.1195 0.7964 279 P 0.0445 0.3752 0.5804 280 A 0.0994 0.4791 0.4215 281 I 0.1774 0.5032 0.3194 282 N 0.2441 0.4399 0.3160 283 W 0.3140 0.4383 0.2477 284 I 0.3653 0.3611 0.2736 285 N 0.3252 0.2903 0.3845 286 A 0.1474 0.3778 0.4748 287 G 0.1277 0.2465 0.6258 288 A 0.2187 0.2593 0.5220 289 I 0.2900 0.2443 0.4657 290 N 0.1878 0.1688 0.6434 291 S 0.1075 0.2094 0.6831 292 T 0.0833 0.2296 0.6871 293 N 0.0782 0.2763 0.6456 294 E 0.0725 0.5286 0.3989 295 T 0.0962 0.6144 0.2894 296 H 0.0540 0.7578 0.1883 297 E 0.0664 0.7825 0.1510 298 R 0.0908 0.7629 0.1463 299 L 0.0638 0.7394 0.1968 300 A 0.0455 0.7018 0.2528 301 N 0.0370 0.5694 0.3937 302 D 0.0412 0.4298 0.5290 303 S 0.0566 0.5681 0.3754 304 I 0.0694 0.7115 0.2190 305 N 0.0687 0.7580 0.1734 306 F 0.0598 0.8535 0.0867 307 I 0.0527 0.8797 0.0676 308 N 0.0563 0.8698 0.0739 309 A 0.0559 0.8620 0.0820 310 L 0.0788 0.8074 0.1138 311 I 0.0999 0.7104 0.1896 312 N 0.1088 0.4987 0.3925 313 T 0.0988 0.3865 0.5147 314 E 0.1142 0.3741 0.5117 315 R 0.1840 0.3413 0.4746 316 E 0.2444 0.2951 0.4605 317 S 0.2921 0.2190 0.4889 318 T 0.4056 0.1601 0.4343 319 I 0.4591 0.1038 0.4371 320 N 0.2247 0.0898 0.6854 321 G 0.1221 0.0791 0.7988 322 E 0.1644 0.1722 0.6635 323 N 0.2228 0.1486 0.6285 324 D 0.1930 0.1325 0.6745 325 I 0.2294 0.1807 0.5899 326 N 0.1269 0.1533 0.7197 327 G 0.0832 0.1648 0.7520 328 H 0.2091 0.2541 0.5369 329 A 0.3600 0.3430 0.2970 330 V 0.3145 0.3897 0.2958 331 E 0.3044 0.4052 0.2904 332 A 0.2356 0.4689 0.2955 333 N 0.1735 0.4761 0.3504 334 I 0.1086 0.7233 0.1682 335 C 0.0830 0.7985 0.1186 336 E 0.0424 0.8864 0.0712 337 F 0.0280 0.9129 0.0591 338 A 0.0259 0.9202 0.0538 339 L 0.0300 0.9135 0.0565 340 L 0.0336 0.8906 0.0757 341 M 0.0394 0.8550 0.1056 342 E 0.0418 0.8032 0.1550 343 R 0.0424 0.7608 0.1968 344 R 0.0520 0.6990 0.2490 345 Y 0.0763 0.6241 0.2996 346 C 0.1149 0.5762 0.3088 347 H 0.1343 0.5141 0.3516 348 R 0.2035 0.4840 0.3125 349 I 0.2002 0.5221 0.2777 350 S 0.1856 0.4901 0.3242 351 T 0.2158 0.4783 0.3059 352 M 0.1972 0.4797 0.3231 353 A 0.1855 0.3907 0.4238 354 S 0.1402 0.3484 0.5114 355 A 0.0650 0.4718 0.4632 356 N 0.0656 0.3249 0.6095 357 D 0.0496 0.2467 0.7036 358 H 0.0710 0.1279 0.8011 359 A 0.0728 0.0383 0.8890 360 P 0.0611 0.0320 0.9069 361 P 0.0739 0.1514 0.7747 362 Y 0.0576 0.3763 0.5660 363 N 0.0480 0.4964 0.4556 364 E 0.0487 0.6855 0.2658 365 W 0.0706 0.7366 0.1928 366 Y 0.0805 0.7287 0.1908 367 E 0.0931 0.6851 0.2218 368 A 0.0842 0.6339 0.2819 369 R 0.1007 0.5127 0.3866 370 T 0.1034 0.4420 0.4546 371 A 0.0438 0.7295 0.2267 372 K 0.0526 0.7355 0.2119 373 E 0.0846 0.6999 0.2155 374 I 0.1323 0.5835 0.2842 375 T 0.1176 0.4991 0.3833 376 E 0.1032 0.5686 0.3281 377 A 0.1020 0.5382 0.3597 378 S 0.1122 0.4893 0.3985 379 Y 0.1224 0.4285 0.4491 380 A 0.1167 0.3372 0.5461 381 N 0.0903 0.2374 0.6723 382 D 0.0915 0.2097 0.6988 383 S 0.1812 0.2157 0.6032 384 M 0.3901 0.1594 0.4505 385 I 0.4974 0.1183 0.3844 386 L 0.3749 0.0877 0.5373 387 E 0.1777 0.0642 0.7581