# List of top-scoring protein chains for T0642.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1oltA 457 9.70e-01 c.1.28.2 93334 3lqaG 332 1.75e+00 2gvkA 317 1.92e+00 d.58.4.14 135782 2r5jA 423 2.71e+00 1x7aL 146 7.78e+00 g.3.11.1,g.3.11.1 121782,121783 1uf3A 228 8.15e+00 d.159.1.6 99317 1amuA 563 1.07e+01 1amuA e.23.1.1 43351 2pv0A 386 1.14e+01 3hqfA 181 1.23e+01 1na6A 404 1.25e+01 b.142.1.1,c.52.1.22 91748,91749 1k4nA 192 1.32e+01 d.32.1.5 72059 2ny4A 317 1.34e+01 d.172.1.1 145706 2qmjA 870 1.48e+01 3l4yA 875 1.49e+01 2ny3A 317 1.51e+01 d.172.1.1 145705 2eknA 159 1.55e+01 1yymG 313 1.68e+01 d.172.1.1 124232 1h76A 696 1.81e+01 c.94.1.2,c.94.1.2 65699,65700 2koeA 40 2.10e+01 1xwhA 66 2.19e+01 2b5lC 222 2.32e+01 1tkeA 224 2.33e+01 d.15.10.1,d.67.1.1 112470,112471 2px2A 269 2.55e+01 3ck6A 252 3.05e+01 2e6sA 77 3.26e+01 2frmA 321 3.40e+01 3mbwA 330 3.41e+01 2ewdA 317 3.52e+01 1fpzA 212 3.61e+01 1fpzA c.45.1.1 59976 3ll5A 249 3.69e+01 1dzlA 505 3.83e+01 1dzlA b.121.6.1 23586 3gwaA 365 3.84e+01 2kftA 56 3.95e+01 3mx0A 409 4.07e+01 2r5hA 424 4.12e+01 2gttA 450 4.26e+01 a.260.1.1 135682 3fl7A 536 4.31e+01 1be3K 56 4.42e+01 f.23.15.1 43672 2x10A 545 4.43e+01 2qadA 322 4.48e+01 3hi1G 321 4.57e+01 1ru0A 105 4.67e+01 d.74.1.1 111937 2aewA 205 4.68e+01 b.1.2.1,b.1.2.1 126648,126649 3hhrB 205 4.70e+01 1axiB b.1.2.1,b.1.2.1 22005,22006 1yfoA 302 4.76e+01 2shpA c.45.1.2 32681 1mjvA 96 4.80e+01 g.17.1.1 79214 3cn9A 226 4.91e+01 1dcoA 104 4.95e+01 1dcpA d.74.1.1 39680 1hwgB 237 4.95e+01 1axiB b.1.2.1,b.1.2.1 21999,22000 1a22B 238 4.96e+01 1axiB b.1.2.1,b.1.2.1 22003,22004 2vdcG 456 5.33e+01 2ohdA 151 5.50e+01 2w02A 620 5.52e+01 1p0kA 349 5.62e+01 c.1.4.1 87648 1pmsA 136 5.69e+01 b.55.1.1 26966 3ffeA 653 5.87e+01 2b1lA 129 6.06e+01 3dkbA 390 6.25e+01 1aweA 130 6.42e+01 b.55.1.1 26968 1sqbK 56 6.48e+01 f.23.15.1 105905 2zscA 141 6.51e+01 2vfjA 366 6.52e+01 1e3dB 542 6.95e+01 1h2rL e.18.1.1 59189 1g0vA 329 7.05e+01 1smrA b.50.1.2 60189 2g0fA 168 7.31e+01 2pkpA 170 7.35e+01 2wphE 59 7.79e+01 2b1kA 168 7.82e+01 2zqzA 326 7.89e+01 3imhA 338 7.93e+01