# List of top-scoring protein chains for t04-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fmyA 220 9.27e-01 2i53A 258 2.16e+00 a.74.1.1,a.74.1.1 147505,147506 3lynA 136 2.48e+00 1lis a.19.1.1 16413 3hwcA 515 3.32e+00 3a4mA 260 3.38e+00 2vrsA 211 5.02e+00 3cngA 189 5.02e+00 1rgxA 114 5.13e+00 g.77.1.1 104932 1sgoA 139 5.27e+00 d.82.3.1 98857 1jeyB 565 5.57e+00 1jeqB b.131.1.2,c.62.1.4 90372,90373 2fxqA 264 6.82e+00 1u55A 188 7.49e+00 d.278.1.1 107677 1zupA 315 9.20e+00 c.55.3.11 125681 2qmcA 377 9.58e+00 2nqoA 376 9.73e+00 d.153.1.6 138473 1mxrA 375 9.93e+00 a.25.1.2 85197 1xikA 375 9.98e+00 1xikA a.25.1.2 16784 2pm7A 399 1.10e+01 3ksyA 1049 1.13e+01 2idrA 177 1.14e+01 3bevA 274 1.15e+01 2qwwA 154 1.24e+01 1l9vA 317 1.29e+01 d.13.2.1,d.216.1.1 73760,73761 2lisA 136 1.46e+01 1lis a.19.1.1 16405 3h9xA 125 1.57e+01 3gxvA 123 1.65e+01 1floA 422 1.66e+01 1floA a.60.9.1,d.163.1.1 18106,42166 2e74D 179 1.73e+01 b.33.1.1,f.23.12.1 132049,132050 3fldA 153 1.76e+01 3lahA 188 1.79e+01 2kllA 161 1.85e+01 3dn7A 194 1.96e+01 1lis 136 1.96e+01 1lis 3dewA 206 2.01e+01 3emxA 135 2.10e+01 2bnmA 198 2.10e+01 a.35.1.3,b.82.1.10 128835,128836 2vooA 193 2.12e+01 a.4.5.46,d.58.7.1 153373,153374 2bb6A 414 2.23e+01 3du3M 314 2.40e+01 3dnsA 135 2.41e+01 3hieA 171 2.43e+01 2yykA 481 2.51e+01 3b77A 193 2.52e+01 b.55.1.13 154921 1ar61 302 2.63e+01 1pov1 1qz8A 113 2.65e+01 b.140.1.1 96619 1mtyG 162 2.66e+01 1mtyG a.23.3.1 16498 2qvsB 310 2.66e+01 1ar71 302 2.68e+01 1pov1 2bsfA 176 2.76e+01 3kdrA 310 2.78e+01 3jrlA 276 2.80e+01 1i7nA 309 2.82e+01 c.30.1.5,d.142.1.3 83681,83682 1jt6A 188 2.85e+01 a.4.1.9,a.121.1.1 67247,67248 3d0fA 106 2.96e+01 1p5sA 203 2.97e+01 a.40.1.1 94147 3biqA 467 3.00e+01 1thx 115 3.02e+01 1thx 1thxA 115 3.02e+01 c.47.1.1 32732 3i57A 185 3.08e+01 1ofwA 296 3.13e+01 a.138.1.1 92850 2ifsA 169 3.27e+01 3fjsA 114 3.33e+01 1a41 234 3.38e+01 1a41 1a41A 234 3.38e+01 d.163.1.2 42174 1uh6A 100 3.41e+01 d.15.1.1 99394 2au3A 407 3.43e+01 1jlvA 209 3.50e+01 a.45.1.1,c.47.1.5 71729,71730 1i6xA 209 3.53e+01 a.4.5.4,b.82.3.2 83673,83674 1g5cA 170 3.70e+01 1g5cA c.53.2.1 60264 3bwgA 239 3.72e+01 a.4.5.6,d.190.1.2 155693,155694 2bukA 196 3.76e+01 b.121.7.1 129220 2a1dD 329 3.78e+01 2r6gF 514 3.80e+01 e.70.1.1,f.58.1.1 151609,151610 2rasA 212 3.81e+01 1yymG 313 3.84e+01 d.172.1.1 124232 2pqrA 129 3.85e+01 3dnhA 258 3.91e+01 3kp1A 763 3.92e+01 1xiwB 79 3.93e+01 b.1.1.4 115368 3a58A 320 3.98e+01 2rd7A 367 4.02e+01 3b9cA 144 4.03e+01 3bqzA 194 4.06e+01 1ppjE 196 4.06e+01 b.33.1.1,f.23.12.1 104260,104261 1fnoA 417 4.12e+01 d.58.19.1,c.56.5.4 70145,75841 1d09B 153 4.23e+01 8atcB d.58.2.1,g.41.7.1 39015,45267 3l82A 215 4.25e+01 3es4A 116 4.30e+01 2ig3A 127 4.37e+01 2pbeA 294 4.37e+01 a.160.1.5,d.218.1.13 149355,149356 1f3aA 222 4.37e+01 1pgtA a.45.1.1,c.47.1.5 17701,32995 1auvA 311 4.50e+01 1auvA c.30.1.5,d.142.1.3 31723,41558 3if6A 266 4.55e+01 1ieaB 228 4.61e+01 1iakB b.1.1.2,d.19.1.1 21632,38206 1s3sG 127 4.62e+01 d.15.1.2 98457 1k8kF 168 4.62e+01 d.198.2.1 68312 3eyxA 216 4.64e+01 2z5eA 122 4.67e+01 3dtaM 314 4.69e+01 1w53A 84 4.69e+01 a.186.1.2 109175 3h0gI 113 4.88e+01 2ojwA 384 4.98e+01 1al21 302 4.99e+01 1pov1 1zh5A 195 5.00e+01 a.4.5.46,d.58.7.1 125073,125074 1zvdA 380 5.02e+01 2waqC 395 5.09e+01 1mv3A 213 5.13e+01 b.34.2.1 91468 2i5hA 205 5.28e+01 e.71.1.1 147513 1mp9A 198 5.31e+01 d.129.1.1,d.129.1.1 91385,91386 2vqzA 166 5.33e+01 1f3vA 179 5.34e+01 1f3vA d.58.22.1 39382 2hhlA 195 5.36e+01 2yzsA 315 5.40e+01 3l4nA 127 5.42e+01 19hcA 292 5.44e+01 19hcA a.138.1.1 19668 3elgA 128 5.51e+01 d.98.2.1 158182 1tit 98 5.68e+01 1tit 3dtsM 314 5.91e+01 1vpsA 289 5.99e+01 1vpsA b.121.6.1 23336 1p2xA 159 6.08e+01 a.40.1.1 104062 3bq3A 270 6.08e+01 2wbmA 252 6.18e+01 2vd3A 289 6.18e+01 3lnlA 370 6.19e+01 1extA 162 6.23e+01 1extA g.24.1.1,g.24.1.1,g.24.1.1 44900,44901,44902 3f7cA 200 6.34e+01 1pb6A 212 6.47e+01 a.4.1.9,a.121.1.1 88017,88018 2e70A 71 6.47e+01 1qvtA 194 6.53e+01 a.4.1.9,a.121.1.1 104602,104603 3mfxA 129 6.55e+01 1vprA 374 6.69e+01 b.60.1.7 120066 2wntA 330 6.77e+01 3idbB 161 6.77e+01 1t33A 224 6.79e+01 a.4.1.9,a.121.1.1 106295,106296 3bxjA 507 6.80e+01 3hk0A 256 6.93e+01 2hrvA 142 6.93e+01 2hrvA b.47.1.4 26429 3br3A 194 6.99e+01 2e5iA 124 6.99e+01 1ois 223 7.18e+01 1a36A 1nu7D 282 7.24e+01 a.8.6.1,a.8.6.1 92191,92192 1hxs1 302 7.34e+01 2inpE 118 7.35e+01 2pv7A 298 7.40e+01 a.100.1.12,c.2.1.6 149887,149888 2w0iA 135 7.40e+01 1sqgA 429 7.47e+01 a.79.1.3,c.66.1.38 105912,105913 1oisA 223 7.51e+01 e.15.1.1 43267 1n4kA 381 7.58e+01 a.118.22.1,b.42.6.1 79992,79993 2hzmA 212 7.59e+01 1hw5A 210 7.59e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 1w1wA 430 7.62e+01 c.37.1.12 114080 3btiA 188 7.63e+01 a.4.1.9,a.121.1.1 155566,155567 3ibmA 167 7.65e+01 2bjfA 329 7.74e+01 3mhsA 476 7.76e+01 1yqbA 100 7.76e+01 d.15.1.1 123876 3cc6A 281 7.78e+01 1k8kE 178 7.81e+01 a.148.1.1 68311 2r7jA 317 7.89e+01 d.13.2.1,d.216.1.1 151645,151646 2ol5A 202 7.92e+01 2cfaA 217 7.94e+01 2zfnA 460 7.96e+01 3gvjA 670 7.96e+01