# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1e3dB 542 1.67e+00 1h2rL e.18.1.1 59189 2qmcA 377 2.59e+00 1jlvA 209 2.82e+00 a.45.1.1,c.47.1.5 71729,71730 3hwcA 515 3.44e+00 3bevA 274 4.19e+00 2nqoA 376 5.55e+00 d.153.1.6 138473 1h2rL 534 5.92e+00 1h2rL e.18.1.1 43298 2fxqA 264 6.56e+00 2o4vA 411 7.56e+00 3gtxA 339 8.84e+00 2i5iA 263 8.87e+00 c.6.2.8 147514 3gthA 337 8.93e+00 3gmeA 549 9.19e+00 2x10A 545 9.29e+00 3dzvA 273 1.01e+01 3do7A 296 1.16e+01 1ubkL 534 1.17e+01 e.18.1.1 88422 1wuiL 534 1.18e+01 e.18.1.1 121289 3dnhA 258 1.18e+01 3ck6A 252 1.23e+01 3gtfA 337 1.26e+01 1sgoA 139 1.28e+01 d.82.3.1 98857 2bemA 170 1.35e+01 b.1.18.2 116698 3gtiA 337 1.37e+01 1txvA 452 1.39e+01 3abaA 403 1.41e+01 1u55A 188 1.73e+01 d.278.1.1 107677 3dclA 284 1.74e+01 1t8hA 277 1.75e+01 d.194.1.2 106664 2zc1A 333 1.77e+01 2vdrA 452 1.83e+01 2i53A 258 1.87e+01 a.74.1.1,a.74.1.1 147505,147506 3cp8A 641 1.88e+01 1xiwB 79 1.89e+01 b.1.1.4 115368 1tit 98 1.89e+01 1tit 2a8aA 439 1.94e+01 1xeaA 323 1.98e+01 c.2.1.3,d.81.1.5 109572,109573 1oltA 457 1.98e+01 c.1.28.2 93334 2z4tA 514 1.99e+01 1rx0A 393 2.05e+01 a.29.3.1,e.6.1.1 98007,98008 3h3xQ 549 2.11e+01 1dzlA 505 2.12e+01 1dzlA b.121.6.1 23586 2au3A 407 2.12e+01 2hb5A 164 2.28e+01 3gu2A 336 2.29e+01 2oerA 214 2.34e+01 2vu9A 444 2.43e+01 3kucB 81 2.49e+01 3lahA 188 2.58e+01 2pm7A 399 2.63e+01 1nf1A 333 2.64e+01 1nf1A a.116.1.2 19110 1wozA 177 2.68e+01 3htwA 328 2.68e+01 3gu9A 331 2.69e+01 3fdkA 323 2.69e+01 3c5mA 396 2.75e+01 1p0iA 529 2.82e+01 c.69.1.1 93867 2pi1A 334 2.84e+01 3gu1A 337 2.91e+01 3e5jA 403 3.09e+01 1aym1 285 3.11e+01 1aym1 1ak0 270 3.14e+01 1ak0 1ak0A 270 3.14e+01 a.124.1.2 19345 1waaA 93 3.16e+01 2ahxA 617 3.18e+01 2ah6A 208 3.27e+01 2bvlA 543 3.33e+01 c.68.1.22 146219 3canA 182 3.35e+01 1k8kF 168 3.37e+01 d.198.2.1 68312 2a97A 439 3.39e+01 1i2kA 269 3.44e+01 e.17.1.1 90661 3kudB 81 3.50e+01 2et1A 201 3.70e+01 b.82.1.2 132351 1ah7 245 3.91e+01 1ah7 1ah7A 245 3.91e+01 a.124.1.1 19339 2zuvA 759 3.95e+01 3ir4A 218 4.13e+01 2wslA 529 4.20e+01 3gy9A 150 4.25e+01 1s48A 609 4.26e+01 e.8.1.4 98475 1u36A 106 4.28e+01 b.1.18.1 107635 2wk6A 482 4.33e+01 2kllA 161 4.42e+01 1dcoA 104 4.51e+01 1dcpA d.74.1.1 39680 3f0nA 414 4.61e+01 2vgaA 207 4.68e+01 3l60A 250 4.68e+01 1ni9A 338 4.70e+01 e.7.1.2 85739 1qvtA 194 4.75e+01 a.4.1.9,a.121.1.1 104602,104603 2zo9B 274 4.83e+01 d.159.1.11 154714 2j22A 148 4.98e+01 2qcuA 501 5.05e+01 2ob9A 130 5.15e+01 2k5gA 191 5.26e+01 d.129.3.5 148273 2qtwB 546 5.27e+01 1ez4A 318 5.30e+01 c.2.1.5,d.162.1.1 64917,64918 3gocA 237 5.30e+01 1h2wA 710 5.33e+01 b.69.7.1,c.69.1.4 76596,76597 3bxjA 507 5.34e+01 2kuaA 170 5.35e+01 2fmyA 220 5.40e+01 1u8vA 490 5.48e+01 a.29.3.1,e.6.1.1 113196,113197 1jt6A 188 5.56e+01 a.4.1.9,a.121.1.1 67247,67248 1o6gA 710 5.58e+01 b.69.7.1,c.69.1.4 81087,81088 3d03A 274 5.59e+01 d.159.1.11 157161 1p2xA 159 5.61e+01 a.40.1.1 104062 1edg 380 5.75e+01 1edg 1edgA 380 5.75e+01 c.1.8.3 28807 2kigA 161 5.77e+01 2qklA 127 5.84e+01 1ockA 412 5.88e+01 c.117.1.1 86802 1nd7A 374 5.95e+01 d.148.1.1 91817 1ztdA 133 6.00e+01 a.149.1.2 125639 1gp6A 356 6.06e+01 b.82.2.1 65441 1wraA 308 6.13e+01 d.157.1.8 121190 2xdwA 710 6.14e+01 3b4rA 224 6.32e+01 1io7A 368 6.33e+01 1f4tA a.104.1.1 18971 3i24A 149 6.35e+01 2gwdA 449 6.38e+01 1fj2A 232 6.38e+01 1auoA c.69.1.14 34720 3d0oA 317 6.43e+01 3ipqA 283 6.45e+01 2hujA 140 6.51e+01 a.24.26.1 136777 3br2A 194 6.57e+01 2evaA 307 6.60e+01 2gwgA 350 6.61e+01 c.1.9.15 135805 3ezzA 144 6.71e+01 2cwaA 263 6.80e+01 1a22B 238 6.84e+01 1axiB b.1.2.1,b.1.2.1 22003,22004 1p5sA 203 6.90e+01 a.40.1.1 94147 2jesA 503 6.91e+01 1uouA 474 6.97e+01 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 2h8aA 154 7.23e+01 f.56.1.1 147239 3kb6A 334 7.31e+01 2xcyA 386 7.33e+01 2wntA 330 7.45e+01 1zpdA 568 7.49e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 2dxnA 274 7.59e+01 d.159.1.11 146605 3fdhA 499 7.86e+01 2hxpA 155 7.86e+01 2hraA 209 7.92e+01