# List of top-scoring protein chains for t04-100-30-str2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dzlA 505 3.84e-01 1dzlA b.121.6.1 23586 1e3dB 542 4.63e-01 1h2rL e.18.1.1 59189 2nqoA 376 4.94e-01 d.153.1.6 138473 2vdrA 452 7.24e-01 1txvA 452 7.54e-01 2ijmA 281 1.25e+00 d.144.1.7 147714 2fxqA 264 1.40e+00 2i53A 258 1.76e+00 a.74.1.1,a.74.1.1 147505,147506 2fmyA 220 2.14e+00 1mp8A 281 2.18e+00 d.144.1.7 91384 1h2rL 534 2.20e+00 1h2rL e.18.1.1 43298 2j0lA 276 2.31e+00 1jlvA 209 2.36e+00 a.45.1.1,c.47.1.5 71729,71730 2qmcA 377 2.40e+00 2zuvA 759 2.59e+00 1ubkL 534 2.84e+00 e.18.1.1 88422 2bemA 170 2.95e+00 b.1.18.2 116698 1xiwB 79 3.11e+00 b.1.1.4 115368 1wuiL 534 3.13e+00 e.18.1.1 121289 3kucB 81 3.98e+00 3dn7A 194 4.54e+00 3c5mA 396 4.61e+00 3h3xQ 549 5.26e+00 2k5gA 191 5.44e+00 d.129.3.5 148273 3bevA 274 5.58e+00 3dnhA 258 5.63e+00 3gmeA 549 6.02e+00 3do7A 296 6.85e+00 1tit 98 7.14e+00 1tit 2j22A 148 7.51e+00 3gtfA 337 8.52e+00 1u55A 188 8.68e+00 d.278.1.1 107677 3kudB 81 8.79e+00 2vu9A 444 8.99e+00 3l60A 250 9.11e+00 3cc6A 281 9.12e+00 2bbhA 269 9.40e+00 d.328.1.1 128266 1c1yB 77 9.72e+00 1c1yB d.15.1.5 37618 3ckzA 385 1.01e+01 3ksyA 1049 1.02e+01 1u36A 106 1.06e+01 b.1.18.1 107635 3gtiA 337 1.08e+01 2cn3A 737 1.10e+01 3gtxA 339 1.11e+01 3f0nA 414 1.16e+01 3gthA 337 1.20e+01 3lahA 188 1.20e+01 1z57A 339 1.23e+01 1i2kA 269 1.32e+01 e.17.1.1 90661 3ipqA 283 1.46e+01 3ck6A 252 1.49e+01 2wk6A 482 1.51e+01 2waqC 395 1.55e+01 3gu1A 337 1.60e+01 3htwA 328 1.62e+01 2kllA 161 1.63e+01 1sgoA 139 1.64e+01 d.82.3.1 98857 3gu9A 331 1.65e+01 2zc1A 333 1.66e+01 3cp8A 641 1.68e+01 1g5cA 170 1.70e+01 1g5cA c.53.2.1 60264 3fdhA 499 1.73e+01 2igvA 173 1.78e+01 b.62.1.1 147667 2x2dB 165 1.80e+01 3fdkA 323 1.80e+01 1dcoA 104 1.82e+01 1dcpA d.74.1.1 39680 1xikA 375 1.84e+01 1xikA a.25.1.2 16784 3gu2A 336 1.84e+01 1kcwA 1046 1.85e+01 b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 23151,23152,23153,23154,23155,23156 3cdjA 559 1.86e+01 2gwdA 449 1.89e+01 3cuzA 532 2.01e+01 3gy9A 150 2.04e+01 2aclB 244 2.10e+01 a.123.1.1 144801 2iubA 363 2.12e+01 d.328.1.1,f.17.3.1 137669,137670 2p4dA 172 2.13e+01 3hv0A 393 2.31e+01 3hwcA 515 2.32e+01 2gwgA 350 2.40e+01 c.1.9.15 135805 3c9uA 342 2.41e+01 d.79.4.1,d.139.1.1 156144,156145 1mxrA 375 2.45e+01 a.25.1.2 85197 3ir4A 218 2.49e+01 3emxA 135 2.50e+01 2wslA 529 2.70e+01 2e56A 144 2.72e+01 2wlwA 165 2.74e+01 1qvtA 194 2.89e+01 a.4.1.9,a.121.1.1 104602,104603 1waaA 93 2.90e+01 2cwaA 263 2.90e+01 1xk4C 113 2.94e+01 a.39.1.2 122057 2koeA 40 2.97e+01 3k0mA 165 3.04e+01 1p0iA 529 3.07e+01 c.69.1.1 93867 3bb1A 274 3.08e+01 2wbfX 265 3.09e+01 3ch3X 265 3.18e+01 1fi4A 416 3.23e+01 1fi4A d.14.1.5,d.58.26.2 59847,59848 1t8hA 277 3.24e+01 d.194.1.2 106664 3kylA 596 3.25e+01 1et0A 269 3.27e+01 1et0A e.17.1.1 43289 1jt6A 188 3.28e+01 a.4.1.9,a.121.1.1 67247,67248 1yndA 165 3.34e+01 b.62.1.1 123721 1ru0A 105 3.34e+01 d.74.1.1 111937 1wozA 177 3.34e+01 2z4tA 514 3.37e+01 2zihA 347 3.39e+01 3gocA 237 3.41e+01 2wpnA 317 3.48e+01 1i7nA 309 3.54e+01 c.30.1.5,d.142.1.3 83681,83682 2qtwB 546 3.58e+01 2hn2A 354 3.61e+01 d.328.1.1,f.17.3.1 136619,136620 3fc6B 266 3.63e+01 1zupA 315 3.65e+01 c.55.3.11 125681 2b69A 343 3.67e+01 c.2.1.2 127974 3mcrA 213 3.71e+01 3di5A 168 3.81e+01 1tdtA 259 3.86e+01 3tdt b.81.1.2 28055 1a7s 221 3.88e+01 1a7s 3abaA 403 3.92e+01 1qz8A 113 3.95e+01 b.140.1.1 96619 2r5kA 424 4.01e+01 3b4rA 224 4.06e+01 3mfxA 129 4.13e+01 1d0qA 103 4.25e+01 1d0qA g.41.3.2 45208 3beqA 385 4.31e+01 3cyeA 387 4.31e+01 3br2A 194 4.32e+01 1xipA 388 4.38e+01 b.69.14.1 115360 1s48A 609 4.40e+01 e.8.1.4 98475 1cjaA 342 4.41e+01 1cjaA d.144.1.3 41708 1p2xA 159 4.42e+01 a.40.1.1 104062 1zghA 260 4.45e+01 b.46.1.1,c.65.1.1 125028,125029 3hf2A 482 4.46e+01 1g7oA 215 4.47e+01 1g7oA a.45.1.1,c.47.1.5 60332,60333 1rx0A 393 4.47e+01 a.29.3.1,e.6.1.1 98007,98008 1h65A 270 4.53e+01 c.37.1.8 65640 2ob9A 130 4.54e+01 2o4vA 411 4.56e+01 3h9xA 125 4.57e+01 1awqA 164 4.58e+01 2cpl b.62.1.1 27461 3gkjA 232 4.62e+01 1rgxA 114 4.66e+01 g.77.1.1 104932 1fwxA 595 4.70e+01 b.6.1.4,b.69.3.1 60069,60070 3b7fA 394 4.90e+01 3eh2A 766 4.93e+01 2jesA 503 4.93e+01 2p5mA 83 4.97e+01 d.74.2.1 149254 3dorA 583 5.04e+01 1nd7A 374 5.09e+01 d.148.1.1 91817 3du6A 596 5.14e+01 1nf1A 333 5.15e+01 1nf1A a.116.1.2 19110 2j0fA 482 5.21e+01 1tw9A 206 5.28e+01 a.45.1.1,c.47.1.5 107381,107382 1awsA 164 5.30e+01 2cpl b.62.1.1 27431 1w53A 84 5.41e+01 a.186.1.2 109175 1qnaA 200 5.50e+01 1ytbA d.129.1.1,d.129.1.1 41226,41227 3b7eA 385 5.52e+01 2wutA 133 5.53e+01 3bxjA 507 5.71e+01 2hujA 140 5.74e+01 a.24.26.1 136777 3tdt 274 5.74e+01 3tdt 3tdtA 274 5.74e+01 b.81.1.2 28053 1p5sA 203 5.80e+01 a.40.1.1 94147 3dnsA 135 5.80e+01 2au3A 407 5.83e+01 1kapP 479 5.91e+01 1sat b.80.7.1,d.92.1.6 28012,40298 2fs6A 137 5.91e+01 b.60.1.2 134005 2ol5A 202 5.95e+01 2oerA 214 5.98e+01 2ah6A 208 5.98e+01 1l3kA 196 5.98e+01 d.58.7.1,d.58.7.1 73539,73540 1ux5A 411 5.98e+01 a.207.1.1 100144 2jdaA 145 6.00e+01 1ockA 412 6.10e+01 c.117.1.1 86802 1sb2A 133 6.12e+01 d.169.1.1 118927 3btiA 188 6.16e+01 a.4.1.9,a.121.1.1 155566,155567 3br3A 194 6.17e+01 2aegA 268 6.20e+01 d.303.1.1 126622 1vqvA 306 6.22e+01 d.79.4.1,d.139.1.1 114024,114025 1uh6A 100 6.23e+01 d.15.1.1 99394 1uouA 474 6.38e+01 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 1we9A 64 6.40e+01 g.50.1.2 114549 2g7bA 137 6.47e+01 2r1fA 270 6.50e+01 2baa 243 6.50e+01 1cnsA 2baaA 243 6.50e+01 d.2.1.1 36243 1nfkA 325 6.56e+01 1a3qA b.1.18.1,b.2.5.3 21929,22444 3eeqA 336 6.57e+01 c.151.1.1,c.152.1.1 158123,158124 2qklA 127 6.57e+01 2wntA 330 6.57e+01 1rypC 244 6.62e+01 1rypC d.153.1.4 41934 2zo9B 274 6.66e+01 d.159.1.11 154714 3g87A 394 6.67e+01 3bqzA 194 6.71e+01 2gtlM 217 6.73e+01 b.61.7.1,g.12.1.1,h.1.32.1 135667,135668,135669 3br5A 194 6.78e+01 3gosA 276 6.78e+01 3hwjA 172 6.80e+01 1zg2A 107 6.90e+01 1v93A 296 6.94e+01 c.1.23.1 100532 2ac1A 541 6.97e+01 2remA 193 6.97e+01 3k1qI 639 6.98e+01 1a22B 238 7.01e+01 1axiB b.1.2.1,b.1.2.1 22003,22004 1ha1 184 7.24e+01 1ha1 2iwkA 642 7.27e+01 1dbhA 354 7.29e+01 1awe a.87.1.1,b.55.1.1 18514,26967 3ievA 308 7.35e+01 2pblA 262 7.49e+01 c.69.1.2 149367 1extA 162 7.50e+01 1extA g.24.1.1,g.24.1.1,g.24.1.1 44900,44901,44902 2pm7A 399 7.51e+01 2bvlA 543 7.67e+01 c.68.1.22 146219 1ztdA 133 7.70e+01 a.149.1.2 125639 3e5jA 403 7.73e+01 3lwsA 357 7.75e+01 2f2bA 246 7.77e+01 3h0gI 113 7.81e+01 3d03A 274 7.86e+01 d.159.1.11 157161