# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1oltA 457 1.04e+00 c.1.28.2 93334 1i2kA 269 1.60e+00 e.17.1.1 90661 1et0A 269 2.10e+00 1et0A e.17.1.1 43289 3gthA 337 3.16e+00 3gtiA 337 3.26e+00 1e3dB 542 3.30e+00 1h2rL e.18.1.1 59189 3gtxA 339 3.31e+00 2vdrA 452 3.61e+00 1txvA 452 3.75e+00 3gtfA 337 4.28e+00 2z4tA 514 4.30e+00 3fdkA 323 4.75e+00 2zc1A 333 4.98e+00 3gu1A 337 5.56e+00 3gu9A 331 5.59e+00 3htwA 328 5.62e+00 1jlvA 209 5.70e+00 a.45.1.1,c.47.1.5 71729,71730 1ypxA 375 6.31e+00 2gwdA 449 7.64e+00 2nqoA 376 8.50e+00 d.153.1.6 138473 2fxqA 264 8.52e+00 3gu2A 336 9.12e+00 2vu9A 444 9.56e+00 2wlwA 165 1.01e+01 2i53A 258 1.03e+01 a.74.1.1,a.74.1.1 147505,147506 2fmyA 220 1.13e+01 2qmcA 377 1.17e+01 2qcuA 501 1.26e+01 3canA 182 1.41e+01 1awsA 164 1.44e+01 2cpl b.62.1.1 27431 3i24A 149 1.45e+01 2phjA 251 1.50e+01 2wqkA 251 1.50e+01 1awqA 164 1.52e+01 2cpl b.62.1.1 27461 2o4vA 411 1.52e+01 2oerA 214 1.67e+01 1e0tA 470 1.67e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1yndA 165 1.68e+01 b.62.1.1 123721 3k0mA 165 1.71e+01 2p4dA 172 1.74e+01 3do7A 296 1.77e+01 1dzlA 505 1.81e+01 1dzlA b.121.6.1 23586 3bevA 274 1.93e+01 1tit 98 2.04e+01 1tit 1ah7 245 2.06e+01 1ah7 1ah7A 245 2.06e+01 a.124.1.1 19339 3dnhA 258 2.06e+01 2pm7A 399 2.06e+01 2qtwB 546 2.10e+01 2x10A 545 2.15e+01 3ksyA 1049 2.23e+01 3gmeA 549 2.24e+01 3d0oA 317 2.29e+01 3dclA 284 2.51e+01 1ez4A 318 2.57e+01 c.2.1.5,d.162.1.1 64917,64918 1sgoA 139 2.57e+01 d.82.3.1 98857 3l60A 250 2.58e+01 2koeA 40 2.63e+01 1u55A 188 2.76e+01 d.278.1.1 107677 2kigA 161 2.85e+01 3dn7A 194 2.87e+01 1g5cA 170 2.90e+01 1g5cA c.53.2.1 60264 2kllA 161 2.93e+01 1dcoA 104 2.93e+01 1dcpA d.74.1.1 39680 2jesA 503 2.97e+01 1wozA 177 2.99e+01 2ijmA 281 3.02e+01 d.144.1.7 147714 1xiwB 79 3.06e+01 b.1.1.4 115368 3c5mA 396 3.06e+01 3ck6A 252 3.12e+01 2a97A 439 3.29e+01 2hb5A 164 3.30e+01 2ob9A 130 3.30e+01 2qugA 394 3.32e+01 2a8aA 439 3.42e+01 3lahA 188 3.44e+01 2hujA 140 3.44e+01 a.24.26.1 136777 3dzvA 273 3.46e+01 3kucB 81 3.47e+01 2x2dB 165 3.72e+01 3cuzA 532 3.73e+01 1mp8A 281 3.76e+01 d.144.1.7 91384 3ipqA 283 3.80e+01 1ru0A 105 3.92e+01 d.74.1.1 111937 2zuvA 759 4.01e+01 2x25B 169 4.02e+01 1q6zA 528 4.08e+01 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 2o9pA 454 4.12e+01 1h2rL 534 4.17e+01 1h2rL e.18.1.1 43298 2e56A 144 4.19e+01 2x2aA 165 4.26e+01 3gy9A 150 4.32e+01 1sb2A 133 4.34e+01 d.169.1.1 118927 2bemA 170 4.50e+01 b.1.18.2 116698 3eyxA 216 4.53e+01 2vkhA 546 4.55e+01 c.68.1.22 153225 1qlpA 394 4.66e+01 1ovaA e.1.1.1 42628 3fdhA 499 4.70e+01 2h6rA 219 4.71e+01 1a22B 238 4.78e+01 1axiB b.1.2.1,b.1.2.1 22003,22004 3l2nA 395 4.78e+01 1yymG 313 4.81e+01 d.172.1.1 124232 3bxjA 507 4.87e+01 1i7nA 309 4.98e+01 c.30.1.5,d.142.1.3 83681,83682 1ockA 412 4.99e+01 c.117.1.1 86802 1xeaA 323 5.01e+01 c.2.1.3,d.81.1.5 109572,109573 2aclB 244 5.06e+01 a.123.1.1 144801 1edg 380 5.11e+01 1edg 1edgA 380 5.11e+01 c.1.8.3 28807 2oyrA 258 5.39e+01 c.66.1.55 149078 1qvtA 194 5.50e+01 a.4.1.9,a.121.1.1 104602,104603 1jt6A 188 5.52e+01 a.4.1.9,a.121.1.1 67247,67248 3mcrA 213 5.58e+01 2qklA 127 5.61e+01 2j5gA 263 5.78e+01 1l8nA 679 6.06e+01 c.1.8.10,d.92.2.2 84564,84565 2ah6A 208 6.08e+01 2j0lA 276 6.12e+01 2ewdA 317 6.14e+01 1auvA 311 6.15e+01 1auvA c.30.1.5,d.142.1.3 31723,41558 2gwgA 350 6.17e+01 c.1.9.15 135805 2j22A 148 6.23e+01 2h8aA 154 6.30e+01 f.56.1.1 147239 1im5A 180 6.31e+01 c.33.1.3 66211 2fnaA 357 6.32e+01 a.4.5.11,c.37.1.20 133809,133810 1ivnA 190 6.40e+01 c.23.10.5 83719 2wk6A 482 6.51e+01 2bvlA 543 6.55e+01 c.68.1.22 146219 3eheA 313 6.75e+01 3cp8A 641 7.00e+01 3dkbA 390 7.14e+01 1xk4C 113 7.14e+01 a.39.1.2 122057 3f0nA 414 7.26e+01 3fc6B 266 7.34e+01 1z57A 339 7.37e+01 1ymkA 175 7.38e+01 c.46.1.1 123699 1tw9A 206 7.41e+01 a.45.1.1,c.47.1.5 107381,107382 3b4rA 224 7.48e+01 3ievA 308 7.48e+01 3ezzA 144 7.52e+01 3cm3A 176 7.61e+01 1bfd 528 7.65e+01 1bfd 3hf2A 482 7.67e+01 3br2A 194 7.69e+01 2fsvA 384 7.69e+01 c.2.1.4,c.23.12.2 134037,134038 1waaA 93 7.71e+01 3h3xQ 549 7.74e+01 2kuaA 170 7.76e+01