# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2nqoA 376 1.23e+00 d.153.1.6 138473 1e3dB 542 2.00e+00 1h2rL e.18.1.1 59189 1u6zA 513 2.43e+00 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 2i53A 258 2.64e+00 a.74.1.1,a.74.1.1 147505,147506 1jlvA 209 3.64e+00 a.45.1.1,c.47.1.5 71729,71730 2qmcA 377 4.18e+00 3ck6A 252 4.37e+00 2fmyA 220 4.37e+00 1dzlA 505 6.11e+00 1dzlA b.121.6.1 23586 3cp8A 641 6.31e+00 2vdrA 452 6.94e+00 2zuvA 759 7.03e+00 1txvA 452 7.34e+00 3dn7A 194 7.39e+00 1oltA 457 7.57e+00 c.1.28.2 93334 3dnhA 258 8.17e+00 3kucB 81 8.17e+00 1h2rL 534 8.61e+00 1h2rL e.18.1.1 43298 2fxqA 264 8.77e+00 3gtfA 337 9.03e+00 3gtiA 337 9.26e+00 1ubkL 534 9.46e+00 e.18.1.1 88422 3gthA 337 9.48e+00 2bemA 170 9.55e+00 b.1.18.2 116698 3gtxA 339 9.98e+00 2ewdA 317 1.00e+01 1wuiL 534 1.06e+01 e.18.1.1 121289 2k5gA 191 1.10e+01 d.129.3.5 148273 1t8hA 277 1.13e+01 d.194.1.2 106664 1xiwB 79 1.14e+01 b.1.1.4 115368 1qvtA 194 1.19e+01 a.4.1.9,a.121.1.1 104602,104603 3gy9A 150 1.20e+01 1g5cA 170 1.35e+01 1g5cA c.53.2.1 60264 2zc1A 333 1.37e+01 3k0mA 165 1.38e+01 1jt6A 188 1.43e+01 a.4.1.9,a.121.1.1 67247,67248 2i8lA 156 1.43e+01 1ypxA 375 1.44e+01 3gu1A 337 1.46e+01 2pm7A 399 1.47e+01 3htwA 328 1.47e+01 2bvlA 543 1.47e+01 c.68.1.22 146219 3br2A 194 1.48e+01 2wlwA 165 1.52e+01 3gu9A 331 1.52e+01 1sgoA 139 1.59e+01 d.82.3.1 98857 3bevA 274 1.60e+01 2x2dB 165 1.65e+01 3b4rA 224 1.66e+01 1p1jA 533 1.67e+01 c.2.1.3,d.81.1.3 87687,87688 3fdkA 323 1.67e+01 3bxjA 507 1.70e+01 1tit 98 1.74e+01 1tit 2phjA 251 1.78e+01 2wqkA 251 1.78e+01 1i2kA 269 1.80e+01 e.17.1.1 90661 1awqA 164 1.82e+01 2cpl b.62.1.1 27461 1ez4A 318 1.83e+01 c.2.1.5,d.162.1.1 64917,64918 3btiA 188 1.83e+01 a.4.1.9,a.121.1.1 155566,155567 1yrbA 262 1.88e+01 c.37.1.10 123915 3d0oA 317 1.90e+01 3l2nA 395 1.91e+01 3hwcA 515 1.93e+01 1yndA 165 1.94e+01 b.62.1.1 123721 2gwgA 350 1.94e+01 c.1.9.15 135805 2ob9A 130 1.95e+01 3br3A 194 1.97e+01 2e85A 159 1.99e+01 2h6rA 219 1.99e+01 2p4dA 172 2.00e+01 2wpnA 317 2.01e+01 2au3A 407 2.03e+01 3ezzA 144 2.03e+01 1edg 380 2.06e+01 1edg 1edgA 380 2.06e+01 c.1.8.3 28807 3fdhA 499 2.16e+01 1ockA 412 2.20e+01 c.117.1.1 86802 1ivnA 190 2.21e+01 c.23.10.5 83719 3hv0A 393 2.25e+01 2vkhA 546 2.26e+01 c.68.1.22 153225 2z4tA 514 2.30e+01 2kigA 161 2.34e+01 2raaA 204 2.35e+01 3kudB 81 2.35e+01 3gu2A 336 2.42e+01 3br5A 194 2.46e+01 1xeaA 323 2.50e+01 c.2.1.3,d.81.1.5 109572,109573 3i24A 149 2.51e+01 3bqzA 194 2.51e+01 1l3kA 196 2.57e+01 d.58.7.1,d.58.7.1 73539,73540 1brmA 367 2.57e+01 1brmA c.2.1.3,d.81.1.1 30030,39945 1u55A 188 2.63e+01 d.278.1.1 107677 2igvA 173 2.67e+01 b.62.1.1 147667 2i5iA 263 2.70e+01 c.6.2.8 147514 3ir4A 218 2.71e+01 1c1yB 77 2.72e+01 1c1yB d.15.1.5 37618 3do7A 296 2.75e+01 2hb5A 164 2.77e+01 3h3xQ 549 2.81e+01 2a97A 439 2.83e+01 1ha1 184 2.86e+01 1ha1 2kllA 161 2.87e+01 1awsA 164 2.89e+01 2cpl b.62.1.1 27431 2jesA 503 2.96e+01 1im5A 180 2.97e+01 c.33.1.3 66211 1a5zA 319 2.98e+01 c.2.1.5,d.162.1.1 30181,42148 1dcoA 104 3.05e+01 1dcpA d.74.1.1 39680 1p2xA 159 3.11e+01 a.40.1.1 104062 1i7nA 309 3.16e+01 c.30.1.5,d.142.1.3 83681,83682 1u36A 106 3.16e+01 b.1.18.1 107635 2qklA 127 3.21e+01 2hujA 140 3.23e+01 a.24.26.1 136777 1ak0 270 3.26e+01 1ak0 1ak0A 270 3.26e+01 a.124.1.2 19345 1zpdA 568 3.27e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1wraA 308 3.30e+01 d.157.1.8 121190 2vu9A 444 3.39e+01 2bibA 547 3.40e+01 b.109.1.1,d.157.1.8 128581,128582 1ru0A 105 3.41e+01 d.74.1.1 111937 3canA 182 3.46e+01 3lahA 188 3.51e+01 3c9uA 342 3.57e+01 d.79.4.1,d.139.1.1 156144,156145 3l60A 250 3.60e+01 3gocA 237 3.62e+01 1g7oA 215 3.65e+01 1g7oA a.45.1.1,c.47.1.5 60332,60333 2x25B 169 3.91e+01 2e56A 144 4.01e+01 2o4vA 411 4.06e+01 3hf2A 482 4.06e+01 1bd3A 243 4.07e+01 1bd3A c.61.1.1 34098 1sb2A 133 4.08e+01 d.169.1.1 118927 3eheA 313 4.17e+01 3f0nA 414 4.20e+01 3gmeA 549 4.22e+01 1p5sA 203 4.23e+01 a.40.1.1 94147 2oerA 214 4.25e+01 1et0A 269 4.28e+01 1et0A e.17.1.1 43289 2w5yA 192 4.32e+01 2pkpA 170 4.35e+01 2b69A 343 4.40e+01 c.2.1.2 127974 1s48A 609 4.40e+01 e.8.1.4 98475 2gwdA 449 4.58e+01 3eyxA 216 4.60e+01 1a22B 238 4.68e+01 1axiB b.1.2.1,b.1.2.1 22003,22004 3ksyA 1049 4.70e+01 3mcrA 213 4.76e+01 3il0A 131 4.78e+01 2gtlM 217 4.94e+01 b.61.7.1,g.12.1.1,h.1.32.1 135667,135668,135669 2j22A 148 4.99e+01 2xcyA 386 5.02e+01 1vqvA 306 5.08e+01 d.79.4.1,d.139.1.1 114024,114025 1ah7 245 5.15e+01 1ah7 1ah7A 245 5.15e+01 a.124.1.1 19339 4pgaA 337 5.30e+01 4pgaA c.88.1.1 35565 2ah6A 208 5.38e+01 2a8aA 439 5.40e+01 1dnpA 471 5.46e+01 1qnf a.99.1.1,c.28.1.1 18775,31630 1ddzA 496 5.46e+01 1ddzA c.53.2.1,c.53.2.1 33372,33373 2zbwA 335 5.48e+01 2wslA 529 5.51e+01 2gvhA 288 5.52e+01 d.38.1.1,d.38.1.1 135776,135777 3kylA 596 5.54e+01 2basA 431 5.54e+01 c.1.33.1,d.110.6.2 128244,128245 1mp8A 281 5.56e+01 d.144.1.7 91384 3dzvA 273 5.56e+01 2koeA 40 5.59e+01 1p0iA 529 5.60e+01 c.69.1.1 93867 2x2aA 165 5.61e+01 2wabA 341 5.61e+01 1eyeA 280 5.62e+01 1aj2 c.1.21.1 29672 1ztdA 133 5.77e+01 a.149.1.2 125639 2gigA 257 5.88e+01 1a8i 842 5.88e+01 1a8i 2j0fA 482 6.04e+01 1fohA 664 6.20e+01 1fohA c.3.1.2,c.47.1.10,d.16.1.2 30381,33078,37900 1a4mA 349 6.23e+01 1a4mA c.1.9.1 29014 5cytR 104 6.30e+01 1ycc a.3.1.1 15878 1xfiA 367 6.33e+01 e.50.1.1 109584 3ipqA 283 6.41e+01 3l6uA 293 6.49e+01 2p39A 155 6.52e+01 1h5uA 842 6.53e+01 1a8i c.87.1.4 60655 2cjaA 522 6.62e+01 2wvgA 568 6.65e+01 1r6lA 239 6.65e+01 d.14.1.4,d.101.1.1 97153,97154 1amy 403 6.69e+01 1jdc 2cwaA 263 6.85e+01 3khdA 520 6.89e+01 1xhvA 257 7.08e+01 c.52.1.19 109597 1xk4C 113 7.14e+01 a.39.1.2 122057 1sviA 195 7.19e+01 c.37.1.8 106048 2gj4A 824 7.23e+01 c.87.1.4 135256 3cesA 651 7.25e+01 3ke3A 379 7.27e+01 2waqC 395 7.28e+01 1xhkA 187 7.31e+01 d.14.1.10 115299 1nd7A 374 7.34e+01 d.148.1.1 91817 3khkA 544 7.39e+01 2h8aA 154 7.56e+01 f.56.1.1 147239 2audA 257 7.58e+01 1b04A 318 7.63e+01 1b04A d.142.2.2 41579 1v93A 296 7.63e+01 c.1.23.1 100532 1fj2A 232 7.66e+01 1auoA c.69.1.14 34720 2pbyA 308 7.69e+01 2aclB 244 7.86e+01 a.123.1.1 144801 3jq0A 493 7.87e+01 1vkjA 285 7.89e+01 c.37.1.5 108666 2q40A 367 7.99e+01 e.50.1.1 139814