# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3lqaG 332 6.12e-01 3h0gI 113 2.47e+00 1floA 422 2.66e+00 1floA a.60.9.1,d.163.1.1 18106,42166 3bwgA 239 4.18e+00 a.4.5.6,d.190.1.2 155693,155694 3h4rA 265 5.33e+00 2eknA 159 6.08e+00 1yymG 313 6.60e+00 d.172.1.1 124232 2fxqA 264 9.41e+00 3eyxA 216 1.18e+01 2z4iA 233 1.20e+01 3abhA 312 1.23e+01 1t4wA 196 1.24e+01 b.2.5.2 106427 1w7jB 151 1.46e+01 a.39.1.5 120690 1extA 162 1.47e+01 1extA g.24.1.1,g.24.1.1,g.24.1.1 44900,44901,44902 1tkeA 224 1.58e+01 d.15.10.1,d.67.1.1 112470,112471 1f32A 149 1.63e+01 1f32A d.62.1.1 39539 2q7nA 488 1.71e+01 2ohdA 151 2.00e+01 3kypA 193 2.10e+01 2od0A 105 2.24e+01 d.198.5.2 148732 2qihA 157 2.30e+01 2eeyA 162 2.36e+01 2dktA 143 2.59e+01 g.89.1.1,g.93.1.1 146537,146538 3h0gA 1752 2.61e+01 2fnaA 357 2.75e+01 a.4.5.11,c.37.1.20 133809,133810 1jk0B 345 2.76e+01 a.25.1.2 63143 1a22B 238 2.79e+01 1axiB b.1.2.1,b.1.2.1 22003,22004 2hrvA 142 2.79e+01 2hrvA b.47.1.4 26429 3exaA 322 2.94e+01 3d55A 91 2.98e+01 1uf3A 228 3.03e+01 d.159.1.6 99317 2zjtA 247 3.12e+01 2jm1A 141 3.22e+01 2h62A 114 3.27e+01 g.17.1.2 136177 3eniA 365 3.61e+01 2v66B 111 3.63e+01 3hvqC 170 3.64e+01 2zzdB 157 3.67e+01 1ekjA 221 3.78e+01 1ekjB c.53.2.1 33364 2rfjA 120 3.82e+01 1o7kA 131 3.90e+01 d.189.1.1 81144 2px2A 269 3.97e+01 2dxcB 157 4.26e+01 2pyqA 114 4.55e+01 a.279.1.1 149953 3i57A 185 4.59e+01 1ku1A 230 4.71e+01 a.118.3.1 72996 2gvkA 317 5.18e+01 d.58.4.14 135782 1ciiA 602 5.47e+01 f.1.1.1,h.4.3.1 43381,45787 2cqfA 63 5.52e+01 1gvnB 287 5.57e+01 c.37.1.21 76354 1r8eA 278 5.59e+01 a.6.1.3,d.60.1.1 104843,104844 2x10A 545 5.62e+01 1ru0A 105 5.71e+01 d.74.1.1 111937 2xdvA 442 5.99e+01 1wozA 177 6.18e+01 3m9lA 205 6.40e+01 1dcoA 104 6.54e+01 1dcpA d.74.1.1 39680 2w5yA 192 6.78e+01 1aym1 285 6.90e+01 1aym1 1ki1B 352 7.11e+01 a.87.1.1,b.55.1.1 72497,72498 2dokA 186 7.15e+01 2oypA 109 7.21e+01 3eojA 366 7.25e+01 3c5jB 190 7.32e+01 1v7mV 163 7.45e+01 a.26.1.2 100458 2p4vA 158 7.49e+01 1xl4A 301 7.51e+01 b.1.18.16,f.14.1.1 115430,115431 1co4A 42 7.56e+01 1co4A g.47.1.1 45347 2clyA 214 7.67e+01 f.52.1.1 145042