PFRMAT SS TARGET T0642 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 6 (1 EBGHTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0642.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 1 METHOD MODEL 1 M C 0.682 D C 0.516 E C 0.297 A T 0.291 R C 0.332 C C 0.383 A C 0.472 S C 0.533 P T 0.459 E T 0.491 R T 0.495 S T 0.410 T C 0.458 E C 0.353 R C 0.345 R E 0.585 I E 0.796 F E 0.863 I E 0.851 C E 0.641 N T 0.378 E T 0.423 W T 0.345 S T 0.317 Y T 0.298 E T 0.314 S T 0.309 T C 0.298 E H 0.385 R H 0.503 D H 0.540 A H 0.657 Y H 0.681 W H 0.700 E H 0.719 R H 0.736 E H 0.679 L H 0.625 E H 0.495 A H 0.507 S H 0.369 E H 0.397 D H 0.354 T H 0.353 H H 0.332 E H 0.326 L H 0.353 A H 0.333 S H 0.277 T H 0.320 S H 0.320 E H 0.299 Q H 0.284 I H 0.297 N C 0.268 T H 0.271 H T 0.266 E T 0.269 N T 0.304 I T 0.320 N T 0.326 T T 0.305 H T 0.313 C T 0.315 A C 0.425 S C 0.541 P C 0.638 P C 0.548 L C 0.447 E C 0.446 A C 0.414 S T 0.439 E T 0.447 G T 0.483 E T 0.428 T C 0.454 R C 0.389 E C 0.362 S C 0.417 T C 0.355 E C 0.305 D C 0.326 A H 0.409 N H 0.391 D H 0.427 L H 0.498 E H 0.449 T H 0.482 A H 0.442 S H 0.356 S H 0.354 E H 0.435 S H 0.385 S H 0.372 M H 0.388 E H 0.345 N C 0.335 T C 0.357 D C 0.337 E H 0.590 T H 0.616 E H 0.607 R H 0.636 M H 0.607 I H 0.576 N H 0.502 E H 0.495 T H 0.404 H H 0.300 E T 0.328 E T 0.309 S T 0.322 T T 0.295 S T 0.273 C E 0.335 I E 0.383 E T 0.362 N T 0.419 T E 0.608 I E 0.857 F E 0.925 I E 0.906 C E 0.808 C E 0.544 E T 0.513 N T 0.570 T T 0.496 E T 0.355 R T 0.293 S E 0.306 T E 0.344 H E 0.402 I E 0.387 S E 0.409 T E 0.278 A T 0.412 R T 0.446 G T 0.476 E T 0.313 T C 0.326 I E 0.278 S H 0.302 D H 0.404 I H 0.412 F H 0.403 F E 0.395 E H 0.374 R H 0.303 E T 0.300 N T 0.358 T T 0.408 A T 0.412 N T 0.458 D T 0.439 H T 0.344 A T 0.287 S E 0.286 V E 0.313 E E 0.372 R E 0.401 Y C 0.371 S C 0.388 P T 0.490 E T 0.362 C E 0.643 I E 0.798 F E 0.818 I E 0.728 C E 0.418 S T 0.418 H T 0.440 A T 0.435 P T 0.372 E H 0.287 W E 0.355 I E 0.575 L E 0.725 L E 0.704 C E 0.508 H E 0.271 E E 0.301 C E 0.372 K E 0.480 I E 0.557 T E 0.501 A E 0.414 T E 0.361 T E 0.318 H H 0.357 E H 0.417 M H 0.500 E H 0.508 E H 0.511 T H 0.478 I H 0.386 N T 0.383 G T 0.428 I C 0.472 N C 0.669 P H 0.805 A H 0.856 C H 0.855 I H 0.782 F H 0.790 I H 0.828 C H 0.753 G H 0.552 R H 0.492 V H 0.480 E H 0.371 H H 0.409 A H 0.504 H H 0.497 A H 0.496 L H 0.522 A H 0.544 S H 0.546 T H 0.629 W H 0.673 C H 0.609 F H 0.725 I H 0.854 N H 0.856 A H 0.866 L H 0.815 I H 0.763 S H 0.734 T H 0.689 S H 0.575 I H 0.615 T H 0.606 A H 0.591 L H 0.514 Y H 0.501 A H 0.577 N H 0.441 D T 0.339 F H 0.376 R H 0.384 A H 0.466 N H 0.330 C H 0.345 E H 0.348 W H 0.383 E H 0.362 R H 0.373 E H 0.412 E H 0.399 L E 0.542 I E 0.586 M E 0.662 I E 0.555 N E 0.351 A C 0.306 T T 0.392 E T 0.466 D T 0.477 I T 0.357 N C 0.455 P H 0.554 R H 0.559 E H 0.607 L H 0.545 I H 0.504 M E 0.502 I H 0.447 N H 0.468 A H 0.666 R H 0.604 Y H 0.609 M H 0.568 A H 0.603 T H 0.577 C H 0.526 H H 0.371 E T 0.395 S H 0.341 S T 0.419 P H 0.397 A H 0.502 I H 0.444 N H 0.407 W H 0.401 I E 0.363 N E 0.350 A H 0.344 G C 0.296 A T 0.288 I E 0.309 N T 0.313 S T 0.398 T T 0.410 N T 0.385 E H 0.297 T H 0.365 H H 0.420 E H 0.434 R H 0.448 L H 0.453 A H 0.512 N H 0.431 D H 0.389 S H 0.462 I H 0.696 N H 0.743 F H 0.819 I H 0.863 N H 0.859 A H 0.851 L H 0.843 I H 0.784 N H 0.563 T H 0.395 E H 0.376 R H 0.353 E H 0.319 S C 0.312 T C 0.301 I C 0.316 N C 0.361 G T 0.414 E T 0.411 N T 0.396 D T 0.431 I T 0.399 N T 0.422 G T 0.376 H C 0.305 A E 0.320 V E 0.346 E H 0.396 A H 0.550 N H 0.566 I H 0.717 C H 0.757 E H 0.822 F H 0.873 A H 0.875 L H 0.853 L H 0.832 M H 0.789 E H 0.759 R H 0.723 R H 0.658 Y H 0.628 C H 0.574 H H 0.517 R H 0.524 I H 0.534 S H 0.471 T H 0.438 M H 0.352 A H 0.300 S T 0.271 A T 0.311 N T 0.462 D T 0.522 H T 0.414 A C 0.440 P C 0.473 P C 0.348 Y H 0.392 N H 0.465 E H 0.601 W H 0.695 Y H 0.680 E H 0.661 A H 0.675 R H 0.639 T H 0.611 A H 0.678 K H 0.678 E H 0.635 I H 0.589 T H 0.532 E H 0.545 A H 0.494 S H 0.374 Y H 0.279 A T 0.324 N T 0.395 D T 0.383 S T 0.283 M H 0.255 I C 0.411 L C 0.610 E C 0.979 END