PFRMAT SS
TARGET T0642
AUTHOR SAM-T02-server
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0642.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 1
METHOD
MODEL 1
M C 0.999
D C 0.827
E C 0.375
A C 0.316
R C 0.306
C C 0.371
A C 0.399
S C 0.486
P C 0.367
E C 0.293
R C 0.324
S C 0.410
T C 0.359
E C 0.325
R E 0.434
R E 0.605
I E 0.758
F E 0.844
I E 0.835
C E 0.652
N E 0.411
E E 0.280
W E 0.250
S C 0.311
Y C 0.314
E C 0.266
S H 0.298
T H 0.338
E H 0.437
R H 0.512
D H 0.609
A H 0.651
Y H 0.716
W H 0.725
E H 0.768
R H 0.758
E H 0.723
L H 0.640
E H 0.599
A H 0.505
S H 0.408
E H 0.410
D H 0.387
T H 0.503
H H 0.538
E H 0.525
L H 0.479
A H 0.357
S H 0.314
T H 0.292
S H 0.310
E H 0.298
Q H 0.268
I C 0.311
N C 0.354
T C 0.298
H C 0.298
E T 0.211
N C 0.304
I C 0.345
N C 0.387
T C 0.224
H C 0.303
C C 0.398
A C 0.395
S S 0.377
P C 0.512
P C 0.492
L C 0.429
E C 0.362
A C 0.319
S C 0.321
E T 0.278
G T 0.294
E C 0.421
T C 0.420
R C 0.365
E C 0.350
S C 0.394
T C 0.386
E C 0.322
D C 0.425
A H 0.256
N T 0.323
D C 0.277
L H 0.360
E H 0.368
T H 0.338
A H 0.332
S C 0.318
S C 0.334
E H 0.291
S H 0.291
S C 0.277
M C 0.316
E C 0.275
N C 0.332
T C 0.378
D C 0.356
E H 0.403
T H 0.431
E H 0.474
R H 0.457
M H 0.440
I H 0.393
N H 0.371
E H 0.445
T H 0.429
H H 0.384
E H 0.368
E H 0.343
S C 0.314
T H 0.330
S H 0.307
C H 0.289
I E 0.289
E E 0.311
N E 0.342
T E 0.578
I E 0.776
F E 0.886
I E 0.880
C E 0.797
C E 0.439
E T 0.289
N T 0.336
T C 0.326
E C 0.366
R C 0.298
S C 0.345
T C 0.317
H E 0.361
I E 0.368
S E 0.341
T C 0.242
A C 0.236
R T 0.325
G T 0.306
E C 0.380
T C 0.363
I H 0.401
S H 0.401
D H 0.396
I H 0.380
F E 0.420
F E 0.403
E E 0.292
R H 0.259
E C 0.263
N C 0.331
T C 0.372
A C 0.259
N T 0.301
D C 0.319
H C 0.308
A C 0.313
S C 0.297
V C 0.294
E C 0.281
R C 0.303
Y C 0.414
S C 0.693
P T 0.339
E T 0.322
C E 0.534
I E 0.814
F E 0.882
I E 0.815
C E 0.561
S C 0.284
H S 0.306
A C 0.426
P C 0.298
E H 0.498
W H 0.500
I H 0.473
L E 0.570
L E 0.530
C E 0.451
H E 0.303
E E 0.285
C E 0.382
K E 0.570
I E 0.647
T E 0.599
A E 0.446
T E 0.310
T H 0.310
H H 0.461
E H 0.535
M H 0.553
E H 0.518
E H 0.469
T H 0.462
I H 0.345
N T 0.464
G T 0.405
I C 0.571
N C 0.736
P H 0.324
A H 0.342
C E 0.348
I E 0.602
F E 0.717
I E 0.654
C E 0.367
G C 0.226
R C 0.243
V H 0.383
E H 0.436
H H 0.483
A H 0.667
H H 0.654
A H 0.687
L H 0.704
A H 0.758
S H 0.793
T H 0.866
W H 0.880
C H 0.870
F H 0.866
I H 0.863
N H 0.834
A H 0.768
L H 0.717
I H 0.674
S H 0.615
T H 0.610
S H 0.549
I H 0.624
T H 0.585
A H 0.479
L H 0.461
Y H 0.373
A H 0.457
N H 0.380
D H 0.339
F H 0.347
R H 0.359
A H 0.344
N H 0.272
C C 0.384
E C 0.383
W H 0.304
E C 0.295
R H 0.376
E H 0.351
E E 0.379
L E 0.606
I E 0.690
M E 0.669
I E 0.538
N E 0.308
A C 0.279
T C 0.275
E S 0.315
D C 0.345
I C 0.463
N C 0.816
P H 0.345
R H 0.428
E H 0.503
L H 0.555
I H 0.452
M E 0.485
I H 0.399
N E 0.336
A H 0.632
R H 0.621
Y H 0.597
M H 0.592
A H 0.527
T H 0.459
C H 0.342
H C 0.305
E T 0.299
S C 0.262
S C 0.449
P C 0.320
A H 0.339
I H 0.372
N H 0.317
W E 0.394
I E 0.368
N E 0.309
A T 0.235
G T 0.409
A C 0.343
I C 0.310
N C 0.370
S C 0.327
T C 0.254
N C 0.288
E H 0.356
T H 0.435
H H 0.536
E H 0.551
R H 0.529
L H 0.517
A H 0.512
N H 0.460
D H 0.454
S H 0.533
I H 0.649
N H 0.673
F H 0.743
I H 0.783
N H 0.724
A H 0.686
L H 0.670
I H 0.573
N H 0.390
T H 0.284
E H 0.273
R C 0.277
E C 0.265
S C 0.249
T C 0.273
I C 0.285
N C 0.307
G C 0.362
E C 0.305
N C 0.237
D C 0.359
I C 0.279
N T 0.283
G C 0.233
H H 0.271
A H 0.326
V H 0.388
E H 0.390
A H 0.613
N H 0.584
I H 0.690
C H 0.686
E H 0.762
F H 0.832
A H 0.843
L H 0.811
L H 0.777
M H 0.723
E H 0.666
R H 0.623
R H 0.563
Y H 0.465
C H 0.411
H H 0.369
R H 0.372
I H 0.386
S H 0.338
T H 0.310
M H 0.326
A H 0.259
S C 0.324
A T 0.287
N T 0.335
D C 0.333
H C 0.326
A C 0.470
P C 0.609
P C 0.513
Y C 0.377
N H 0.439
E H 0.576
W H 0.602
Y H 0.583
E H 0.563
A H 0.560
R H 0.532
T H 0.505
A H 0.552
K H 0.561
E H 0.561
I H 0.476
T H 0.443
E H 0.525
A H 0.483
S H 0.413
Y H 0.351
A H 0.371
N H 0.260
D C 0.247
S C 0.245
M E 0.319
I E 0.356
L C 0.643
E C 0.998
END