# List of top-scoring protein chains for t2k.100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1e3dB 542 3.42e-01 1h2rL e.18.1.1 59189 2frvB 536 5.40e-01 1h2rL e.18.1.1 43291 1h2aL 567 9.88e-01 1h2rL e.18.1.1 43299 1jlvA 209 1.17e+00 a.45.1.1 71729 c.47.1.5 71730 1h2rL 534 1.31e+00 1h2rL e.18.1.1 43298 1ubkL 534 1.50e+00 e.18.1.1 88422 1wuiL 534 1.57e+00 e.18.1.1 121289 2i53A 258 1.67e+00 a.74.1.1 147505 a.74.1.1 147506 2gwgA 350 1.92e+00 c.1.9.15 135805 1i2kA 269 1.94e+00 e.17.1.1 90661 2nqoA 376 2.03e+00 d.153.1.6 138473 3gtiA 337 2.15e+00 1frvB 536 2.33e+00 1h2rL e.18.1.1 43296 1txvA 452 2.69e+00 2vdrA 452 2.78e+00 3gtfA 337 2.88e+00 3do7A 296 2.89e+00 3gtxA 339 2.91e+00 3gthA 337 2.99e+00 1et0A 269 3.08e+00 1et0A e.17.1.1 43289 3gmeA 549 3.14e+00 1dzlA 505 3.23e+00 1dzlA b.121.6.1 23586 1t8hA 277 3.30e+00 d.194.1.2 106664 2zuvA 759 3.34e+00 2raaA 204 4.01e+00 3h3xQ 549 4.03e+00 2z4tA 514 4.12e+00 3dnhA 258 4.17e+00 3gu1A 337 4.51e+00 3dzvA 273 4.63e+00 2zc1A 333 4.65e+00 3htwA 328 4.66e+00 3gu9A 331 4.67e+00 1p1jA 533 5.26e+00 c.2.1.3 87687 d.81.1.3 87688 3fdkA 323 5.28e+00 2waqC 395 5.62e+00 3l60A 250 5.67e+00 1yndA 165 6.04e+00 b.62.1.1 123721 2qmcA 377 6.37e+00 2e56A 144 6.38e+00 1ldnA 316 6.40e+00 1hyhA c.2.1.5 30166 d.162.1.1 42133 1xeaA 323 6.57e+00 c.2.1.3 109572 d.81.1.5 109573 3gu2A 336 6.71e+00 1awsA 164 6.88e+00 2cpl b.62.1.1 27431 2bemA 170 6.92e+00 b.1.18.2 116698 1awqA 164 7.02e+00 2cpl b.62.1.1 27461 2wlwA 165 7.05e+00 3k0mA 165 7.27e+00 3ck6A 252 7.35e+00 1g5cA 170 7.48e+00 1g5cA c.53.2.1 60264 1ez4A 318 7.76e+00 c.2.1.5 64917 d.162.1.1 64918 3ksyA 1049 7.83e+00 1edg 380 8.03e+00 1edg 1edgA 380 8.03e+00 c.1.8.3 28807 2phjA 251 8.35e+00 2wqkA 251 8.35e+00 2x2dB 165 8.51e+00 1oltA 457 8.72e+00 c.1.28.2 93334 1tit 98 9.08e+00 1tit 3d0oA 317 9.38e+00 3kucB 81 9.53e+00 3bb1A 274 9.53e+00 2ob9A 130 1.01e+01 3cp8A 641 1.04e+01 2wk6A 482 1.04e+01 2igvA 173 1.05e+01 b.62.1.1 147667 1qvtA 194 1.07e+01 a.4.1.9 104602 a.121.1.1 104603 1ockA 412 1.09e+01 c.117.1.1 86802 2koeA 40 1.10e+01 2fmyA 220 1.12e+01 2p4dA 172 1.13e+01 3dkbA 390 1.17e+01 1wozA 177 1.24e+01 1dcoA 104 1.24e+01 1dcpA d.74.1.1 39680 1jbjA 186 1.30e+01 b.1.1.4 66482 b.1.1.4 66483 2ewdA 317 1.35e+01 1ypxA 375 1.36e+01 2i8lA 156 1.39e+01 1xiwB 79 1.41e+01 b.1.1.4 115368 2fxqA 264 1.42e+01 1amy 403 1.48e+01 1jdc 1guaB 81 1.48e+01 1c1yB d.15.1.5 37619 1sb2A 133 1.49e+01 d.169.1.1 118927 1h65A 270 1.51e+01 c.37.1.8 65640 3kudB 81 1.52e+01 3ir4A 218 1.52e+01 2ijmA 281 1.53e+01 d.144.1.7 147714 3k1qI 639 1.54e+01 2wbfX 265 1.55e+01 1u55A 188 1.61e+01 d.278.1.1 107677 2vfjA 366 1.65e+01 1jt6A 188 1.65e+01 a.4.1.9 67247 a.121.1.1 67248 2ah6A 208 1.65e+01 1mp8A 281 1.68e+01 d.144.1.7 91384 2a97A 439 1.69e+01 2b2hA 399 1.73e+01 3ch3X 265 1.79e+01 3bxjA 507 1.80e+01 2qklA 127 1.85e+01 2e85A 159 1.85e+01 1nd7A 374 1.87e+01 d.148.1.1 91817 2wpnA 317 1.88e+01 1ru0A 105 1.89e+01 d.74.1.1 111937 1ta0A 197 1.92e+01 c.108.1.16 106729 3fdhA 499 1.92e+01 2ajrA 331 1.94e+01 c.72.1.1 126892 2i5iA 263 1.95e+01 c.6.2.8 147514 1ah7 245 1.96e+01 1ah7 1ah7A 245 1.96e+01 a.124.1.1 19339 2x25B 169 1.98e+01 3cdjA 559 1.99e+01 2x2aA 165 2.00e+01 2pm7A 399 2.01e+01 3br2A 194 2.02e+01 1nfiA 301 2.09e+01 1a3qA b.1.18.1 21942 b.2.5.3 22455 2acvA 463 2.12e+01 c.87.1.10 146047 3btiA 188 2.18e+01 a.4.1.9 155566 a.121.1.1 155567 1p2xA 159 2.19e+01 a.40.1.1 104062 3ievA 308 2.21e+01 1p5sA 203 2.26e+01 a.40.1.1 94147 2vkhA 546 2.28e+01 c.68.1.22 153225 2ghtA 181 2.28e+01 2a8aA 439 2.28e+01 2zihA 347 2.30e+01 3bk2A 562 2.30e+01 1amuA 563 2.31e+01 1amuA e.23.1.1 43351 2h6rA 219 2.33e+01 3gocA 237 2.39e+01 3lahA 188 2.40e+01 1u7gA 385 2.41e+01 f.44.1.1 107723 3hv0A 393 2.43e+01 3cc6A 281 2.44e+01 3dn7A 194 2.57e+01 5cytR 104 2.58e+01 1ycc a.3.1.1 15878 2kllA 161 2.58e+01 1avaA 403 2.59e+01 1jdc b.71.1.1 27797 c.1.8.1 28784 2xcyA 386 2.60e+01 2bvlA 543 2.61e+01 c.68.1.22 146219 3br3A 194 2.64e+01 1xk4C 113 2.68e+01 a.39.1.2 122057 2o4vA 411 2.70e+01 1ymkA 175 2.73e+01 c.46.1.1 123699 3br5A 194 2.76e+01 3eyxA 216 2.79e+01 1g7oA 215 2.87e+01 1g7oA a.45.1.1 60332 c.47.1.5 60333 3bqzA 194 2.93e+01 3khdA 520 2.94e+01 1wn1A 356 2.95e+01 2gwdA 449 3.00e+01 2pbyA 308 3.03e+01 2wslA 529 3.07e+01 1ve2A 235 3.08e+01 c.90.1.1 120008 1a5zA 319 3.11e+01 c.2.1.5 30181 d.162.1.1 42148 1eyeA 280 3.11e+01 1aj2 c.1.21.1 29672 1c1yB 77 3.14e+01 1c1yB d.15.1.5 37618 3eheA 313 3.16e+01 3pga1 337 3.22e+01 4pgaA 1p0iA 529 3.22e+01 c.69.1.1 93867 1u6zA 513 3.27e+01 a.211.1.5 119608 c.55.1.8 119609 c.55.1.8 119610 1tw9A 206 3.30e+01 a.45.1.1 107381 c.47.1.5 107382 1l8nA 679 3.31e+01 c.1.8.10 84564 d.92.2.2 84565 3ll4A 292 3.32e+01 1zvdA 380 3.33e+01 2f2bA 246 3.36e+01 2j22A 148 3.38e+01 1a22B 238 3.44e+01 1axiB b.1.2.1 22003 b.1.2.1 22004 1hrkA 359 3.45e+01 1hrkA c.92.1.1 61228 1zg2A 107 3.46e+01 3gy9A 150 3.52e+01 2hb5A 164 3.52e+01 3i24A 149 3.58e+01 1ivnA 190 3.59e+01 c.23.10.5 83719 2izzA 322 3.61e+01 3bevA 274 3.62e+01 2kuaA 170 3.66e+01 2a2kA 175 3.66e+01 3cvoA 202 3.71e+01 1i7nA 309 3.71e+01 c.30.1.5 83681 d.142.1.3 83682 3ipqA 283 3.73e+01 3hf2A 482 3.74e+01 1fj2A 232 3.78e+01 1auoA c.69.1.14 34720 2pkpA 170 3.79e+01 1u36A 106 3.83e+01 b.1.18.1 107635 1gqiA 708 3.83e+01 c.1.8.10 76279 d.92.2.2 76280 1z57A 339 3.84e+01 3eeqA 336 3.90e+01 c.151.1.1 158123 c.152.1.1 158124 2px2A 269 3.92e+01 3l2nA 395 3.97e+01