# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1oaaA 260 3.896e-38 c.2.1.2 29829 2gdzA 267 8.653e-37 c.2.1.2 135043 1bdbA 268 8.223e-33 c.2.1.2 29874 2a4kA 238 2.269e-32 c.2.1.2 126156 1yo6A 238 3.178e-32 c.2.1.2 123769 3ijrA 282 9.297e-32 3dwfA 272 1.325e-31 3i3oA 283 1.679e-31 1snyA 249 4.783e-31 c.2.1.2 105833 1e7wA 268 1.211e-30 c.2.1.2 59373 1ydeA 251 1.414e-30 c.2.1.2 122980 1oaa 260 2.187e-30 1oaa 2nwqA 230 3.486e-30 2zatA 252 1.078e-29 1jtvA 279 1.681e-29 c.2.1.2 84230 2qq5A 239 1.705e-29 1y5mA 266 1.786e-29 c.2.1.2 122645 2cfcA 251 2.147e-29 3kzvA 250 2.422e-29 3bmoA 256 2.653e-29 2o23A 249 6.861e-29 c.2.1.2 138884 2jahA 246 9.185e-29 1xhlA 275 1.018e-28 c.2.1.2 109591 1bdb 268 1.072e-28 1bdb 1pwxA 253 1.462e-28 c.2.1.2 95262 3imfA 249 1.705e-28 1ja9A 260 1.971e-28 c.2.1.2 62817 1zemA 261 4.043e-28 c.2.1.2 124984 1enp 298 5.777e-28 1enp 1uluA 247 5.934e-28 c.2.1.2 113292 1xkqA 273 6.030e-28 c.2.1.2 115417 1yb1A 244 6.378e-28 c.2.1.2 116599 2z1nA 238 7.193e-28 2wd7A 250 8.229e-28 2p91A 255 8.561e-28 2ae2A 260 1.767e-27 1bdb c.2.1.2 29945 2hq1A 222 4.946e-27 1g0oA 273 5.679e-27 1ybvA c.2.1.2 60181 1wmaA 276 8.929e-27 c.2.1.2 121042 1xu9A 270 1.008e-26 c.2.1.2 116052 1qsgA 259 2.047e-26 1eny c.2.1.2 29935 1fmcA 256 2.305e-26 1cydA c.2.1.2 29856 3kvoA 274 2.551e-26 3g49A 264 3.253e-26 1n5dA 289 3.682e-26 c.2.1.2 80030 1x7gA 257 3.913e-26 c.2.1.2 114929 1k2wA 257 4.305e-26 c.2.1.2 90927 3i1jA 248 4.488e-26 1ybvA 271 6.527e-26 1ybvA c.2.1.2 29948 1zk4A 252 6.561e-26 c.2.1.2 125176 3f4bA 285 6.858e-26 1sbyA 255 8.367e-26 c.2.1.2 118930 2pnfA 249 1.010e-25 3n74A 228 2.618e-25 2o2yA 291 3.687e-25 c.2.1.2 138894 3e03A 268 3.878e-25 1d7oA 298 4.993e-25 1enp c.2.1.2 29907 1spxA 238 5.118e-25 c.2.1.2 98958 3lt0A 288 5.213e-25 1dhrA 237 5.897e-25 c.2.1.2 29832 2x9gA 252 5.941e-25 3guyA 205 7.194e-25 3a28A 258 7.557e-25 1fjhA 237 1.075e-24 1fjhB c.2.1.2 29870 1xseA 275 1.151e-24 c.2.1.2 115925 1gcoA 262 1.191e-24 1ybvA c.2.1.2 29884 2bgkA 268 1.314e-24 c.2.1.2 128480 2oosA 287 1.531e-24 c.2.1.2 148938 3i4fA 243 2.147e-24 2dtxA 256 2.862e-24 2pd6A 234 3.250e-24 1vl8A 252 3.475e-24 c.2.1.2 108733 1o5iA 235 5.490e-24 c.2.1.2 92499 1yxmA 298 6.763e-24 c.2.1.2 124192 1w6uA 289 9.500e-24 c.2.1.2 114288 3k31A 263 1.045e-23 2ph3A 246 1.359e-23 3gemA 218 1.683e-23 2nm0A 222 1.690e-23 1geeA 262 1.696e-23 c.2.1.2 90509 2dknA 255 1.741e-23 3ksuA 235 1.786e-23 1eny 269 1.799e-23 1eny 2ew8A 230 1.944e-23 c.2.1.2 132447 3gedA 243 2.426e-23 2ztmA 256 2.548e-23 3f1lA 246 3.343e-23 3grkA 249 3.640e-23 3edmA 227 4.350e-23 1iy8A 259 5.030e-23 c.2.1.2 83774 1e6wA 252 6.314e-23 1e6wA c.2.1.2 59326 2yutA 203 6.424e-23 1b16A 255 7.025e-23 1b16A c.2.1.2 29875 1fds 283 8.253e-23 1fds 3ioyA 278 9.659e-23 2ag5A 247 1.118e-22 c.2.1.2 126719 3iahA 254 1.508e-22 2bd0A 241 1.783e-22 c.2.1.2 128321 1c14A 257 1.931e-22 1eny c.2.1.2 29927 2ztuA 236 2.155e-22 1uh5A 288 2.212e-22 c.2.1.2 107840 3gdfA 268 2.365e-22 1x1eA 240 2.893e-22 3gdgA 268 2.933e-22 1qg6A 258 4.322e-22 1eny c.2.1.2 29919 1xg5A 255 4.553e-22 c.2.1.2 115277 3h7aA 213 5.349e-22 2d1yA 241 5.525e-22 c.2.1.2 131151 1gegA 256 6.574e-22 1ybvA c.2.1.2 29888 1hxhA 254 6.682e-22 c.2.1.2 76725 1edoA 245 8.940e-22 1ybvA c.2.1.2 29896 1cydA 243 1.211e-21 1cydA c.2.1.2 29825 1ae1A 246 1.601e-21 1bdb c.2.1.2 29943 1nffA 245 1.613e-21 c.2.1.2 80457 1dhr 237 1.617e-21 1dhr 2wdzA 255 1.692e-21 2ekpA 239 1.974e-21 3llsA 405 2.427e-21 3l6eA 211 4.135e-21 2hsdA 254 4.493e-21 1e6wA c.2.1.2 29866 2z5lA 454 4.823e-21 1hdcA 254 4.834e-21 1e6wA c.2.1.2 29862 1ooeA 236 6.908e-21 c.2.1.2 87196 1x1tA 237 7.374e-21 c.2.1.2 121597 2c07A 247 9.774e-21 c.2.1.2 129577 1gz6A 302 1.050e-20 c.2.1.2 76410 3iccA 256 1.122e-20 3m1aA 271 1.135e-20 1e3sA 242 1.495e-20 1e6wA c.2.1.2 59201 1fjhB 237 1.703e-20 1fjhB c.2.1.2 29871 1zmtA 253 2.291e-20 c.2.1.2 125363 3ezlA 244 5.680e-20 1q7bA 244 7.757e-20 c.2.1.2 96026 1h5qA 261 1.370e-19 1cydA c.2.1.2 60643 1uzmA 228 8.722e-19 c.2.1.2 119811 2fwmX 213 9.169e-19 2h7mA 269 1.834e-18 c.2.1.2 136219 3enkA 341 2.400e-18 1udcA 339 4.376e-18 c.2.1.2 29785 1zbqA 303 7.078e-18 c.2.1.2 124862 1zmoA 244 7.159e-18 1uayA 242 8.945e-18 c.2.1.2 88390 3d7lA 203 2.159e-16 3lylA 248 3.024e-16 1xel 339 4.656e-16 1xel 1y1pA 343 5.347e-16 c.2.1.2 122550 2wsbA 255 1.513e-15 1ek6A 347 2.366e-15 1xel c.2.1.2 29800 1orrA 339 4.727e-15 c.2.1.2 93460 3e9nA 190 7.066e-15 1udbA 339 1.934e-14 c.2.1.2 29787 2hrzA 343 3.809e-14 1i3kA 348 5.054e-14 1xel c.2.1.2 61595 2gn4A 330 1.189e-13 1luaA 288 1.219e-12 c.2.1.7 78216 c.58.1.4 78217 1z45A 675 1.585e-12 b.30.5.4 124427 c.2.1.2 124428 3a1nA 316 1.777e-12 2z1mA 339 2.280e-12 2fr1A 457 3.702e-12 c.2.1.2 133961 c.2.1.2 133962 1xq6A 254 6.033e-12 c.2.1.2 115829 2q46A 254 6.920e-12 c.2.1.2 139825 2pk3A 310 1.346e-11 1r6dA 323 1.692e-11 c.2.1.2 97148 1bxkA 342 5.494e-11 1bxkA c.2.1.2 29803 1jayA 213 6.017e-11 c.2.1.6 66478 1n7hA 332 2.958e-10 c.2.1.2 80250 1kewA 362 3.837e-10 c.2.1.2 68544 2x6tA 308 4.033e-10 2c29D 325 6.419e-10 3dqpA 220 8.722e-10 2p4hX 311 1.287e-09 1oc2A 347 1.463e-09 c.2.1.2 92765 1rpnA 322 3.576e-09 c.2.1.2 97708 2pzmA 317 5.251e-09 1t2aA 339 7.139e-09 c.2.1.2 99078 2p5yA 312 7.252e-09 3dhnA 217 9.220e-09 2bkaA 232 1.293e-08 c.2.1.2 128666 3h2sA 217 1.354e-08 3e8xA 215 1.468e-08 2c5aA 364 2.040e-08 c.2.1.2 129894 2b69A 313 3.697e-08 c.2.1.2 127974 1wvgA 353 3.863e-08 c.2.1.2 121339 2exxA 306 6.639e-08 1db3A 336 2.513e-07 1db3A c.2.1.2 29813 2yy7A 313 2.973e-07 1he2A 206 4.397e-07 1he2A c.2.1.2 60966 1vl0A 282 4.743e-07 c.2.1.2 108704 1z7bA 335 5.485e-07 c.2.1.2 124599 1eq2A 274 5.733e-07 1eq2A c.2.1.2 29814 3eheA 291 6.064e-07 1e6uA 316 1.588e-06 1bsvA c.2.1.2 29805 1gy8A 368 1.657e-06 c.2.1.2 83376 3ew7A 173 1.672e-06 1hdoA 206 2.074e-06 1he2A c.2.1.2 60965 1rkxA 350 2.246e-06 c.2.1.2 97631 1a7aA 432 3.371e-06 1b3rA c.2.1.4 30104 c.23.12.3 31364 2q1sA 337 3.439e-06 1sb8A 342 3.479e-06 c.2.1.2 105410 1i2cA 393 7.277e-06 c.2.1.2 83666 2bllA 331 7.896e-06 c.2.1.2 128733 1i24A 393 1.051e-05 c.2.1.2 83663 2zklA 362 1.861e-05 3m2pA 288 2.208e-05 1n2sA 299 2.502e-05 c.2.1.2 79857 1qycA 308 3.644e-05 c.2.1.2 96581 1li4A 431 4.063e-05 c.2.1.4 84616 c.23.12.3 84617 2ggsA 274 4.270e-05 1u9jA 333 4.679e-05 c.2.1.2 113243 1e7sA 315 5.098e-05 1bsvA c.2.1.2 29806 2wm3A 297 5.864e-05 1qrrA 391 7.515e-05 1qrrA c.2.1.2 29824 1bsvA 318 8.098e-05 1bsvA c.2.1.2 29809 3i6iA 303 1.118e-04 1bwsA 315 1.243e-04 1bsvA c.2.1.2 29812 1e7rA 315 1.453e-04 1bsvA c.2.1.2 29808 2v6gA 365 2.470e-04 2gasA 308 3.567e-04 3gpiA 274 4.409e-04 2r6jA 311 5.715e-04 2a35A 209 1.897e-03 c.2.1.2 126072 1qydA 313 2.506e-03 c.2.1.2 96583 2jl1A 288 3.365e-03 2zcuA 276 4.914e-03 1xgkA 326 5.095e-03 c.2.1.2 115286 3dxfA 293 7.271e-03 1k6xA 325 7.478e-03 c.2.1.2 68238 3c1oA 315 9.653e-03 3iusA 283 1.337e-02 1gpjA 400 2.232e-02 a.151.1.1 65451 c.2.1.7 65452 d.58.39.1 65453 3e48A 280 4.280e-02 1txgA 336 8.315e-02 a.100.1.6 112775 c.2.1.6 112776 1x0vA 349 9.900e-02 3krtA 447 1.218e-01 2f1kA 280 1.264e-01 a.100.1.12 132772 c.2.1.6 132773 2hk9A 270 1.595e-01 1nytA 272 2.241e-01 c.2.1.7 86417 c.58.1.5 86418 2gptA 499 2.270e-01 1z82A 313 2.479e-01 1p77A 266 3.262e-01 c.2.1.7 94214 c.58.1.5 94215 1p9oA 270 3.581e-01 c.72.3.1 94397 2d5cA 262 3.740e-01 1pj5A 828 4.846e-01 b.44.2.1 94742 c.3.1.2 94743 d.16.1.5 94744 d.250.1.1 94745 1pqwA 184 5.976e-01 c.2.1.1 88278 2vq3A 182 6.213e-01 3jynA 326 6.342e-01 1npyA 270 6.510e-01 c.2.1.7 85995 c.58.1.5 85996 2eihA 344 6.743e-01 3c7aA 404 6.997e-01 1tt7A 330 7.067e-01 b.35.1.2 112623 c.2.1.1 112624 2z2vA 350 7.240e-01 3hadA 294 1.121e+00 2hdhA a.100.1.3 18799 c.2.1.6 30203 3fbgA 337 1.198e+00 2nloA 282 1.212e+00 3a63A 350 1.275e+00 1vi2A 285 1.381e+00 c.2.1.7 100726 c.58.1.5 100727 3ic5A 116 1.388e+00 3dmeA 367 1.417e+00 1npdA 288 1.418e+00 c.2.1.7 80681 c.58.1.5 80682 2eggA 279 1.453e+00 3abiA 350 1.489e+00 1f0yA 292 1.492e+00 2hdhA a.100.1.3 18793 c.2.1.6 30197 2o7sA 501 1.553e+00 1gu7A 365 1.764e+00 b.35.1.2 83321 c.2.1.1 83322 1evyA 347 1.765e+00 1evyA a.100.1.6 18811 c.2.1.6 30215 2axqA 446 1.834e+00 3hwrA 300 1.876e+00 3eyxA 198 1.981e+00 2rghA 547 2.043e+00 1yb5A 325 2.049e+00 b.35.1.2 116601 c.2.1.1 116602 2c0cA 354 2.080e+00 3iupA 377 2.087e+00 1xa0A 320 2.094e+00 b.35.1.2 115021 c.2.1.1 115022 5nul 139 2.149e+00 5nul 1ks9A 292 2.179e+00 a.100.1.7 68857 c.2.1.6 68858 3k96A 327 2.195e+00 2w3qA 230 2.248e+00 1ff9A 448 2.303e+00 1ff9A c.2.1.3 30039 d.81.1.2 39954 3g17A 287 2.461e+00 3d3bJ 88 2.480e+00 3fbtA 273 2.514e+00 1vpdA 295 2.519e+00 a.100.1.1 113951 c.2.1.6 113952 3i4eA 413 2.530e+00 3gohA 298 2.595e+00 2wekA 342 2.664e+00 1nvtA 288 2.843e+00 c.2.1.7 86270 c.58.1.5 86271 3gazA 332 2.847e+00 1chmA 402 2.879e+00 1chmA c.55.2.1 33545 d.127.1.1 41142 1n8kA 375 2.880e+00 b.35.1.2 80298 c.2.1.1 80299 1qorA 327 3.002e+00 1qorA b.35.1.2 24766 c.2.1.1 29782 3donA 265 3.017e+00 3d1lA 258 3.061e+00 2hcyA 348 3.202e+00 1zejA 283 3.335e+00 1y56B 375 3.381e+00 1c0pA 364 3.540e+00 1an9A c.4.1.2 30647 d.16.1.3 37934 2hdhA 294 3.620e+00 2hdhA a.100.1.3 18795 c.2.1.6 30199 1yb4A 292 3.843e+00 1rjwA 340 3.859e+00 b.35.1.2 97582 c.2.1.1 97583 1o89A 321 3.991e+00 b.35.1.2 92644 c.2.1.1 92645 2bafA 167 4.002e+00 3i83A 311 4.078e+00 1ryiA 365 4.290e+00 c.3.1.2 118813 d.16.1.3 118814 1wy2A 352 4.293e+00 1ng4A 365 4.685e+00 c.3.1.2 85666 d.16.1.3 85667 3d3kA 234 4.819e+00 3adoA 311 4.864e+00 2gk6A 603 4.943e+00 3b6zA 353 5.033e+00 3gmsA 332 5.043e+00 2dm6A 332 5.126e+00 b.35.1.2 131567 c.2.1.1 131568 2cvzA 289 5.346e+00 a.100.1.1 130890 c.2.1.6 130891 1lluA 342 5.547e+00 b.35.1.2 91064 c.2.1.1 91065 1h1tA 159 5.656e+00 c.26.1.3 83458 3lg3A 420 5.699e+00 1n9gA 365 5.701e+00 b.35.1.2 91720 c.2.1.1 91721 2whnA 111 5.916e+00 2ph0A 162 6.110e+00 1zcjA 460 6.174e+00 3gqvA 353 6.257e+00 1u7zA 217 6.513e+00 c.72.3.1 113107 1pv9A 338 6.692e+00 c.55.2.1 95157 d.127.1.1 95158 2dpoA 311 6.861e+00 1vs0A 300 7.098e+00 1iz0A 296 7.145e+00 b.35.1.2 83821 c.2.1.1 83822 3m0oA 386 7.167e+00 2ew2A 314 7.263e+00 1u3wA 375 7.343e+00 b.35.1.2 113013 c.2.1.1 113014 1uufA 340 7.514e+00 b.35.1.2 100006 c.2.1.1 100007 3hlkA 409 8.260e+00 3if8A 266 8.334e+00 1wlyA 323 8.343e+00 2vcyA 333 8.575e+00 1bg6A 350 8.606e+00 a.100.1.5 18810 c.2.1.6 30214 1ym3A 194 8.924e+00 2q02A 273 9.163e+00 c.1.15.4 149978 1p0fA 373 9.239e+00 b.35.1.2 87642 c.2.1.1 87643 1pl8A 357 9.530e+00 b.35.1.2 94878 c.2.1.1 94879 3hn2A 303 9.906e+00 2pnkA 425 1.008e+01 c.1.9.8 149674 3ikzA 160 1.016e+01 1sayA 362 1.044e+01 1sayA c.2.1.4 30102 c.23.12.2 31362 1p80A 728 1.053e+01 c.23.16.3 94337 e.5.1.1 94338 3cnyA 301 1.062e+01 1l9cA 386 1.079e+01 c.3.1.2 77815 d.16.1.3 77816 3lxyA 330 1.096e+01 3c1qA 116 1.106e+01 1pgjA 479 1.116e+01 2pgd a.100.1.1 18783 c.2.1.6 30195 3k9wA 164 1.125e+01 1ekjA 211 1.157e+01 1ekjB c.53.2.1 33364 3mogA 471 1.192e+01 1el5A 386 1.199e+01 1b3mA c.3.1.2 30369 d.16.1.3 37937 1wn1A 357 1.218e+01 2czcA 335 1.262e+01 c.2.1.3 145052 d.81.1.1 131044 1zsyA 348 1.267e+01 1ptmA 330 1.272e+01 c.77.1.3 95104 3l6dA 294 1.287e+01 1jztA 244 1.313e+01 c.104.1.1 63319 2qkbA 153 1.320e+01 2x2sA 151 1.350e+01 2vxzA 154 1.370e+01 1yodA 31 1.438e+01 1axeA 375 1.468e+01 2ohxA b.35.1.2 24681 c.2.1.1 29697 1edzA 318 1.478e+01 1ee9A c.2.1.7 30287 c.58.1.2 33935 3d00A 185 1.487e+01 2h6eA 324 1.502e+01 1zvpA 129 1.511e+01 d.58.18.9 125714 d.58.18.9 125715 1z98A 252 1.550e+01 2ohxA 375 1.610e+01 2ohxA b.35.1.2 24669 c.2.1.1 29685 2gf3A 386 1.626e+01 c.3.1.2 135070 d.16.1.3 135071 2x58A 726 1.637e+01 1a71A 375 1.652e+01 2ohxA b.35.1.2 24673 c.2.1.1 29689 1bg6 350 1.652e+01 1bg6 1u5kA 243 1.671e+01 b.40.4.13 113038 g.45.1.2 113039 2olnA 386 1.674e+01 1cf9A 728 1.675e+01 1cf9A c.23.16.3 31441 e.5.1.1 42815 1vg0A 482 1.675e+01 c.3.1.3 108596 d.16.1.6 108597 1axgA 375 1.697e+01 2ohxA b.35.1.2 24691 c.2.1.1 29707 2zbwA 334 1.731e+01 1hi0P 665 1.733e+01 1hi0P e.8.1.6 61051 3e3iA 209 1.754e+01 3h15A 174 1.781e+01 1em8A 148 1.783e+01 c.128.1.1 90457 2a8dA 222 1.785e+01 2zz9A 224 1.806e+01 2zxdA 442 1.810e+01 2iw2A 478 1.841e+01 2g1uA 138 1.870e+01 1odtC 318 1.913e+01 c.69.1.25 86885 2qcuA 500 1.943e+01 1bmtA 247 1.950e+01 1bmtA a.46.1.1 17757 c.23.6.1 31235 3cumA 297 1.950e+01 a.100.1.1 156995 c.2.1.6 156996 1jvbA 348 1.954e+01 b.35.1.2 77181 c.2.1.1 77182 1cj3A 393 1.976e+01 1pbe c.3.1.2 30347 d.16.1.2 37878 2r60A 457 1.980e+01 1aa0A 114 1.985e+01 h.1.17.1 45659 1jeiA 54 2.008e+01 1jeiA a.140.1.1 62918 2a5vA 211 2.026e+01 2zsgA 357 2.031e+01 1vj0A 367 2.042e+01 b.35.1.2 100786 c.2.1.1 100787 1g3qA 238 2.092e+01 1hyqA c.37.1.10 60237 3d4oA 291 2.115e+01 3i4cA 341 2.160e+01 1qjcA 158 2.177e+01 1b6tA c.26.1.3 63328 1p16A 391 2.186e+01 b.40.4.6 87661 d.142.2.3 87662 1jdw 361 2.196e+01 1jdw 2wvvA 439 2.196e+01 2wtbA 677 2.215e+01 1ymgA 234 2.220e+01 f.19.1.1 145918 3beyA 90 2.223e+01 3lx4A 408 2.259e+01 2b0jA 345 2.267e+01 a.100.1.11 127639 c.2.1.6 127640 1h2bA 344 2.280e+01 b.35.1.2 90543 c.2.1.1 90544 1x19A 351 2.309e+01 2dsmA 73 2.321e+01 d.372.1.1 146559 3dwwA 143 2.324e+01 3mt0A 282 2.342e+01 1tt0A 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