PFRMAT SS
TARGET T0640
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0640.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 1286
METHOD
MODEL 1
M C 0.842
S C 0.697
L C 0.477
E T 0.550
K T 0.828
Q T 0.920
K T 0.921
G E 0.527
L E 0.959
A E 0.983
I E 0.973
I E 0.876
T C 0.503
G T 0.565
A T 0.531
S T 0.505
Q T 0.394
G H 0.618
I H 0.903
G H 0.968
A H 0.996
V H 0.997
I H 0.999
A H 0.999
A H 0.999
G H 0.998
L H 0.995
A H 0.980
T H 0.951
D H 0.811
G C 0.887
Y C 0.868
R E 0.697
V E 0.988
V E 0.994
L E 0.990
I E 0.941
A E 0.691
R C 0.472
S C 0.517
K H 0.708
Q H 0.848
N H 0.912
L H 0.962
E H 0.972
K H 0.972
V H 0.971
H H 0.984
D H 0.984
E H 0.970
I H 0.936
M H 0.930
R H 0.891
S H 0.832
N H 0.530
K T 0.446
H T 0.486
V T 0.637
Q T 0.494
E E 0.391
P E 0.855
I E 0.959
V E 0.963
L E 0.916
P E 0.874
L E 0.671
D T 0.407
I T 0.650
T T 0.645
D T 0.534
C H 0.693
T H 0.756
K H 0.849
A H 0.941
D H 0.972
T H 0.976
E H 0.982
I H 0.988
K H 0.987
D H 0.985
I H 0.974
H H 0.908
Q H 0.877
K H 0.774
Y H 0.422
G C 0.855
A C 0.828
V C 0.602
D E 0.466
I E 0.923
L E 0.940
V E 0.887
N E 0.640
A T 0.331
A T 0.390
A T 0.466
M C 0.354
F C 0.375
M T 0.464
D T 0.488
G T 0.482
S G 0.398
L G 0.439
S G 0.461
E C 0.612
P C 0.872
V H 0.954
D H 0.972
N H 0.974
F H 0.995
R H 0.998
K H 0.998
I H 0.998
M H 0.998
E H 0.996
I H 0.989
N H 0.982
V H 0.993
I H 0.993
A H 0.992
Q H 0.997
Y H 0.996
G H 0.997
I H 0.995
L H 0.996
K H 0.991
T H 0.986
V H 0.976
T H 0.953
E H 0.989
I H 0.987
M H 0.977
K H 0.960
V H 0.893
Q H 0.754
K C 0.645
N C 0.494
G C 0.411
Y E 0.595
I E 0.947
F E 0.950
N E 0.872
V E 0.627
A E 0.385
S T 0.295
R G 0.342
A T 0.278
A E 0.333
K E 0.430
Y E 0.357
G C 0.364
F T 0.615
A T 0.662
D T 0.612
G T 0.416
G H 0.462
I H 0.867
Y H 0.913
G H 0.958
S H 0.969
T H 0.989
K H 0.999
F H 0.998
A H 0.998
L H 0.998
L H 0.998
G H 0.996
L H 0.990
A H 0.982
E H 0.997
S H 0.994
L H 0.992
Y H 0.972
R H 0.968
E H 0.966
L H 0.926
A H 0.685
P H 0.566
L T 0.385
G C 0.753
I C 0.505
R E 0.946
V E 0.986
T E 0.953
T E 0.950
L E 0.850
C E 0.595
P C 0.415
G T 0.383
W E 0.389
V C 0.313
N C 0.459
T C 0.497
D H 0.304
M H 0.345
A H 0.397
K H 0.370
K H 0.364
A C 0.325
G C 0.367
T H 0.506
P H 0.628
F H 0.702
K H 0.713
D H 0.725
E H 0.711
E H 0.628
M H 0.615
I H 0.471
Q C 0.585
P H 0.710
D H 0.786
D H 0.854
L H 0.901
L H 0.918
N H 0.933
T H 0.908
I H 0.887
R H 0.878
C H 0.862
L H 0.818
L H 0.733
N H 0.598
L H 0.438
S T 0.600
E T 0.705
N T 0.705
V T 0.489
C T 0.652
I T 0.741
K T 0.712
D T 0.440
I H 0.918
V H 0.966
F H 0.969
E H 0.995
M H 0.997
K H 0.999
K H 0.999
S H 1.000
I H 0.999
I H 0.999
E H 0.996
G H 0.972
H H 0.857
H H 0.624
H C 0.361
H C 0.582
H C 0.665
H C 0.968
END