a2m2html output for tmp.a2m

Citations (SAM, SAM-T99, HMMs)

R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.

Sequence numbers correspond to the following labels:

- T0639
- gi|15676409|ref|NP_273546.1|_1:125 hypothetical protein NMB0500 [Neisseria meningitidis MC58]
- gi|15677615|ref|NP_274774.1| hypothetical protein NMB1774 [Neisseria meningitidis MC58]
- gi|161869441|ref|YP_001598608.1| hypothetical protein NMCC_0452 [Neisseria meningitidis 053442]
- gi|7225725|gb|AAF40932.1| hypothetical protein NMB0500 [Neisseria meningitidis MC58]
- gi|7227028|gb|AAF42114.1| hypothetical protein NMB1774 [Neisseria meningitidis MC58]
- gi|161594994|gb|ABX72654.1| conserved hypothetical protein [Neisseria meningitidis 053442]
- gi|261392013|emb|CAX49493.1| hypothetical protein [Neisseria meningitidis 8013]
- gi|15676410|ref|NP_273547.1|_1:124 hypothetical protein NMB0501 [Neisseria meningitidis MC58]
- gi|15677614|ref|NP_274773.1| hypothetical protein NMB1773 [Neisseria meningitidis MC58]
- gi|161869442|ref|YP_001598609.1| hypothetical protein NMCC_0453 [Neisseria meningitidis 053442]
- gi|7225727|gb|AAF40933.1| hypothetical protein NMB0501 [Neisseria meningitidis MC58]
- gi|7227027|gb|AAF42113.1| hypothetical protein NMB1773 [Neisseria meningitidis MC58]
- gi|161594995|gb|ABX72655.1| conserved hypothetical protein [Neisseria meningitidis 053442]
- gi|261392014|emb|CAX49494.1| hypothetical protein [Neisseria meningitidis 8013]

              10        20        30         40        50        60    
              |         |         |          |         |         |    
   1 SNAMETLNDIKKILINVGLYQGFDLTDPKVSEEVNHE.TANMKWIKDYTSDGNWDNEFKEDLKNF
   2 ---METLNDIKKILINVGLYQGFDLTDPKVSEEVNHE.TANMKWIKDYTSDGNWDNEFKEDLKNF
   3 ---MKNFNVVKESLRELGIKQGFDLYEKATTEKLNSEdPLDLQWLSNYSSD--WNDELEEDFDSF


          70        80        90       100       110       120        
          |         |         |         |         |         |        
   1 LDYMEVCQLALNDKNFKIASNSLFMAMIYAGNLSLIFDSIKTDISTLLSAEYKKNSFSWPSLDE
   2 LDYMEVCQLALNDKNFKIASNSLFMAMIYAGNLSLIFDSIKTDISTLLSAEYKKNSFSWPSLDE
   3 FQHMKEYQYAIDNEDIKSACSSLCEAMLYVGNIKNFFEFLKSDMIRLLRGESKTTDFQWPQFDE