# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1lb2B	84	7.211	a.60.3.1	77871
1elwA	118	13.05	a.118.8.1	19207
1om2A	95	14.19	a.23.4.1	16520
2hpsA	186	17.48		
1jndA	420	20.20	c.1.8.5,d.26.3.1	71757,71758
1wt4A	73	22.83		
3maxA	367	23.28		
1ceo	343	31.09		
2i5uA	83	37.83	a.275.1.1	147519
2v1tA	73	43.05		
1c3pA	375	45.32	c.42.1.2	32606
2g47A	990	46.08		
3ebvA	302	46.89		
2kqzA	155	47.55		
1hl9A	449	47.69	b.71.1.3,c.1.8.11	90650,90651
3e11A	114	50.13	d.92.1.17	157969
1k04A	162	52.33	a.24.14.1	67904
2eg2A	112	53.87		
2d5bA	500	56.41	a.27.1.1,c.26.1.1	131268,131269
3hr5B	226	57.02		
1go5A	69	57.19	a.5.2.3	65410
1jeyB	565	58.19	b.131.1.2,c.62.1.4	90372,90373
1edtA	271	59.77	c.1.8.5	28993
3gg7A	254	60.01		
2o66A	135	64.21		
3h9cA	547	64.57		
1z1bA	356	67.76	d.10.1.4,d.163.1.1	124346,124347
2imgA	151	69.60		
3bzqA	114	73.16		
2gw8A	114	73.42		
2wk2A	540	75.13		
3mhyA	112	75.17		
3k63A	126	77.21		
2ns1B	116	77.22	d.58.5.1	145694
2wlzA	548	77.53		
2q4xA	221	81.42	a.132.1.3	139880
3eegA	325	82.61		
1gnkA	112	82.92	d.58.5.1	39073
3mp4A	298	84.21		
1zz1A	369	84.48		
2fiqA	420	84.57	c.1.10.7	133527
1vytE	25	87.22	j.68.1.1	108912
1gaiA	472	88.27	a.102.1.1	18819
1hxmA	229	88.97	b.1.1.1,b.1.1.2	61367,61368