# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g47A	990	16.52		
1lb2B	84	17.62	a.60.3.1	77871
2imgA	151	23.04		
1om2A	95	25.65	a.23.4.1	16520
3h9cA	547	28.50		
1wt4A	73	28.62		
3e11A	114	28.83	d.92.1.17	157969
1jndA	420	32.59	c.1.8.5,d.26.3.1	71757,71758
2d5bA	500	35.96	a.27.1.1,c.26.1.1	131268,131269
1xu2R	47	38.39	g.24.1.2	116042
1zz1A	369	38.43		
3maxA	367	38.55		
1cznA	169	39.58	c.23.5.1	31181
2ebn	289	41.72		
2v1tA	73	46.38		
1ceo	343	47.27		
3gg7A	254	53.83		
1vytE	25	59.85	j.68.1.1	108912
2eg2A	112	60.87		
1k04A	162	67.00	a.24.14.1	67904
1gc5A	467	67.52	c.72.1.3	60429
1kteA	105	67.81	c.47.1.1	32771
1c3pA	375	68.13	c.42.1.2	32606
2vqmA	413	68.35		
2wk2A	540	70.67		
2wlzA	548	73.76		
3bzqA	114	75.48		
2jtvA	65	76.81		
3m1mA	335	79.17		
1wthD	391	79.54	b.106.1.1,b.106.1.1	121268,121269
1y5hA	133	82.20	d.37.1.1	144595
2kqzA	155	82.56		
2o66A	135	82.90		
1ponB	36	86.73		
1l5xA	280	87.98	c.106.1.1	77718
1ejrC	567	88.30	b.92.1.1,c.1.9.2	28420,29042
2q4xA	221	88.43	a.132.1.3	139880
2vh3A	113	88.85		
2gw8A	114	89.83