# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3m46A	666	1.761		
1d8wA	426	3.494	c.1.15.2	29394
3mkkA	666	4.263		
1e43A	483	4.510	b.71.1.1,c.1.8.1	59217,59218
3mczA	352	8.394		
1vhoA	346	10.46	b.49.3.1,c.56.5.4	100694,100695
1auoA	218	10.83	c.69.1.14	34716
3a5iA	389	11.08		
1kblA	873	12.56	c.1.12.2,c.8.1.1,d.142.1.5	68384,68385,68386
2fvyA	309	15.10	c.93.1.1	134227
1ca1	370	15.24		
1ctn	540	16.74		
3emvA	253	18.54		
3i0zA	389	21.91		
1qhlA	227	22.61	c.37.1.12	32382
1jvsA	400	23.29	a.69.3.1,c.2.1.3,d.81.1.3	77187,77188,77189
1ejrC	567	23.59	b.92.1.1,c.1.9.2	28420,29042
2bs9A	503	24.06	b.71.1.2,c.1.8.3	129062,129063
3fozA	316	24.35		
1lb2B	84	25.75	a.60.3.1	77871
1a6cA	513	27.32	b.121.4.2,b.121.4.2,b.121.4.2	23296,23297,23298
2bk9A	153	28.48		
2fbaA	492	28.62	a.102.1.1	133239
3crrA	323	28.75		
1c7gA	456	30.46	c.67.1.2	90415
2d5bA	500	30.93	a.27.1.1,c.26.1.1	131268,131269
2bvfA	459	31.50		
3dd6A	255	32.03		
3lmlA	460	33.89		
2zndA	172	33.99		
1zp4A	304	35.17		
1r9lA	309	37.01	c.94.1.1	97262
1qnf	484	37.08		
3i9wA	290	38.02		
3gqnA	772	39.34		
1om2A	95	40.11	a.23.4.1	16520
3hdiA	421	40.98		
3hrjA	439	41.39		
2fcwA	109	41.64	a.13.1.1	133288
1wpgA	994	41.79	b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1	114806,114807,114808,114809
1d3vA	323	44.22	c.42.1.1	32559
3if5A	456	44.61		
3fg1A	696	45.20		
3gtiA	337	46.22		
1u2zA	433	47.31	c.66.1.31	107626
3k21A	191	47.70		
1pvmA	184	47.85	d.37.1.1,g.41.13.1	144367,95173
2v1tA	73	47.87		
1v4vA	376	48.66	c.87.1.3	100313
1at3A	247	50.32	b.57.1.1	27021
2g47A	990	50.52		
1q2lA	939	51.83	d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1	118731,118732,118733,118734
3iaeA	570	52.05		
1w7jA	795	52.40	b.34.3.1,c.37.1.9	120688,120689
1hu3A	260	52.41	a.118.1.14	19137
3f2iA	172	52.62		
1wt4A	73	52.88		
2vj8A	611	54.25	a.118.1.7,b.98.1.1,d.92.1.13	153183,153184,153185
1f75A	249	54.25	c.101.1.1	59662
2q62A	247	54.48		
2w9xA	366	54.92		
2imgA	151	54.93		
1k04A	162	55.18	a.24.14.1	67904
2jc5A	259	55.81		
1ri5A	298	55.93	c.66.1.34	97502
1gaiA	472	57.87	a.102.1.1	18819
1av6A	289	57.88	c.66.1.25	34218
1a7lA	389	58.54	c.94.1.1	35787
3lppA	898	59.03		
2rc3A	135	59.04	d.37.1.1	151867
1d0cA	444	59.25	d.174.1.1	64769
1uypA	432	59.62	b.29.1.19,b.67.2.3	100176,100177
1fqvD	149	60.21	a.157.1.1,d.42.1.1	19263,38667
3hgjA	349	60.43		
1azsC	388	60.65	a.66.1.1,c.37.1.8	18203,32086
1m4jA	142	60.96	d.109.1.2	78602
3ivmA	693	61.18		
1alvA	173	61.22	a.39.1.8	17370
1t0bA	252	61.53	c.23.16.6	106199
1c7sA	858	61.74	b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1	21812,22408,29011,40410
1qysA	106	62.25	k.41.1.1	96603
3a16A	373	62.79		
1l6uA	128	63.48	d.15.4.1	73630
3mjfA	431	64.64		
1qnoA	344	65.31	c.1.8.3	28838
3eebA	209	65.47		
2b5nA	323	65.49		
2p10A	286	66.95	c.1.12.9	149144
3kvlA	390	67.61		
1z5hA	780	69.70		
2b30A	301	70.68	c.108.1.10	127759
1bd8	156	71.03		
1rg9A	383	71.53	d.130.1.1,d.130.1.1,d.130.1.1	97427,97428,97429
2isnA	364	71.79		
1bk6A	422	71.98	a.118.1.1	19133
1jdc	429	74.94		
3einA	209	75.81		
2fiqA	420	75.95	c.1.10.7	133527
1dpeA	507	75.95	c.94.1.1	35799
3lwaA	183	76.06		
3e11A	114	76.09	d.92.1.17	157969
2vh3A	113	76.33		
1dik	874	77.00		
1l6sA	323	77.26	c.1.10.3	73627
2eb4A	267	78.45		
3m5rA	133	80.54		
1wn1A	356	85.81		
2vqmA	413	86.10		
3dhzA	329	87.54	a.25.1.2	157741
3gu2A	336	88.52