# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1lb2B	84	16.25	a.60.3.1	77871
3e11A	114	25.45	d.92.1.17	157969
2g47A	990	26.00		
3ebvA	302	26.56		
2kqzA	155	27.90		
1om2A	95	27.99	a.23.4.1	16520
1jndA	420	39.00	c.1.8.5,d.26.3.1	71757,71758
1xu2R	47	41.26	g.24.1.2	116042
1wt4A	73	45.76		
1cznA	169	46.49	c.23.5.1	31181
3maxA	367	47.11		
3k1hA	158	52.09		
3h9cA	547	55.44		
1ceo	343	57.04		
3g6mA	406	58.47		
1ponB	36	61.70		
1gaiA	472	62.14	a.102.1.1	18819
1xqrA	296	66.09	a.118.1.21	122241
1vytE	25	67.30	j.68.1.1	108912
1go5A	69	68.61	a.5.2.3	65410
3htyA	94	68.73		
2ebn	289	69.03		
2jtvA	65	69.11		
1k04A	162	71.38	a.24.14.1	67904
2wk2A	540	71.61		
1zz1A	369	73.06		
2v1tA	73	73.77		
2d5bA	500	73.86	a.27.1.1,c.26.1.1	131268,131269
1wthD	391	75.80	b.106.1.1,b.106.1.1	121268,121269
1c3pA	375	77.02	c.42.1.2	32606
2eg2A	112	77.93		
1gc5A	467	82.47	c.72.1.3	60429
2wlzA	548	84.49		
2o66A	135	87.93		
2q4xA	221	88.37	a.132.1.3	139880
1edtA	271	88.73	c.1.8.5	28993