# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1tqjA	230	0.8174	c.1.2.2	107228
1rpxA	230	1.326	c.1.2.2	28536
2fliA	220	1.821	c.1.2.2	133714
1ho1A	242	2.874	c.1.24.1	61097
1m5wA	243	5.106	c.1.24.1	84836
3inpA	246	5.662		
3ctlA	231	8.732		
1k77A	260	10.65	c.1.15.5	72096
1oj6A	151	11.06	a.1.1.2	93088
3ct7A	231	11.45		
1wt4A	73	11.50		
1jndA	420	11.61	c.1.8.5,d.26.3.1	71757,71758
1uch	230	12.08		
1gkrA	458	12.82	b.92.1.3,c.1.9.6	70251,70252
1fchA	368	13.51	a.118.8.1	19212
2v1tA	73	16.34		
1guxA	218	16.57	a.74.1.3	18388
2g0wA	296	19.56	c.1.15.4	134503
3lpmA	259	19.83		
3fpfA	298	21.38		
1yx1A	264	21.68	c.1.15.7	124169
1ak2A	233	22.08	c.37.1.1,g.41.2.1	31894,45195
2r7gA	347	22.75	a.74.1.3,a.74.1.3	151637,151638
2ftwA	521	25.30	b.92.1.3,c.1.9.6	134083,134084
1q1fA	151	26.75	a.1.1.2	104476
3mtiA	185	26.89		
2qulA	290	27.36		
3fniA	159	30.42		
3dlrA	202	30.48		
2cygA	312	31.91	c.1.8.3	131025
2chgA	226	33.45		
3ju2A	284	33.88		
3bct	457	37.73		
1g5rA	196	38.54	c.37.1.11	32367
3f4wA	211	40.09		
2p4gA	270	41.52		
2c12A	439	41.77	a.29.3.1,e.6.1.1	129616,129617
1mw7A	240	43.88	e.39.1.1	79557
1ixkA	315	43.98	c.66.1.38	90716
1jeyB	565	44.55	b.131.1.2,c.62.1.4	90372,90373
1d3gA	367	44.56	c.1.4.1	28600
3hm4A	156	46.38		
3fndA	312	46.97		
2dzxA	248	47.14		
1x46A	150	48.45		
2dc3A	193	50.65		
1hdsA	141	51.43	a.1.1.2	15378
3hr4A	219	51.45		
1kzyC	259	51.82	c.15.1.4,c.15.1.4	73383,73384
2odtX	328	52.57		
1kb9A	431	54.77	d.185.1.1,d.185.1.1	77311,77312
2py6A	409	55.10	c.66.1.56	149932
3dc8A	490	55.56		
2dztA	248	56.26		
1hlbA	158	56.28	a.1.1.2	15625
2iyfA	430	56.34		
3fw2A	150	58.79		
1om2A	95	60.27	a.23.4.1	16520
1g5tA	196	60.68	c.37.1.11	32366
2e0tA	151	63.87		
1o08A	221	64.60	c.108.1.6	86525
1i9sA	210	65.28	c.45.1.1	62099
2vdwB	287	65.67		
1zz1A	369	66.22		
1ycdA	243	66.29		
3d1kA	142	67.08	a.1.1.2	157208
1dm1A	146	67.35	a.1.1.2	15153
1ceoA	343	67.52	c.1.8.3	28808
1iyhA	198	67.89	a.45.1.1,c.47.1.5	83790,83791
1rxdA	159	71.70	c.45.1.1	111959
2ekcA	262	72.18		
2ou3A	161	75.04	a.287.1.1	149018
1i2mA	216	75.65	c.37.1.8	61568
2yvuA	186	77.17		
3c25A	383	79.65		
2pii	112	80.49		
1ezvA	430	81.35	d.185.1.1,d.185.1.1	59541,59542
1r7aA	504	81.57	b.71.1.1,c.1.8.1	97192,97193
1xd3A	230	81.89	d.3.1.6	115145
1ceo	343	84.60		
1hlb	158	85.28		
3gxhA	157	85.33		
3ix3A	173	86.58