# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1gxmA	332	6.595	a.102.5.1	76371
1cipA	353	6.677	a.66.1.1,c.37.1.8	18210,32093
2w91A	653	10.68		
1pfvA	551	11.94	a.27.1.1,c.26.1.1,g.41.1.1	94660,94661,94662
1om2A	95	12.59	a.23.4.1	16520
1yz4A	160	15.39		
2hwjA	205	15.97	d.268.1.3	147421
1vloA	381	16.53	b.44.2.1,d.250.1.1	108838,108839
1wt4A	73	17.87		
1yx2A	365	19.84		
2wbyA	990	20.20		
3a8jA	364	20.39		
1vlyA	338	20.44	b.44.2.1,d.250.1.1	108871,108872
3a8kA	364	20.62		
3e4zA	990	24.92		
1wrmA	165	31.49		
2avxA	171	36.76		
3ix3A	173	39.58		
1o5kA	306	42.76	c.1.10.1	92504
3cwwA	990	43.53		
3ct7A	231	43.71		
3e11A	114	45.13	d.92.1.17	157969
2qorA	204	45.66		
3feyC	467	47.39		
2v1tA	73	48.97		
3bzqA	114	49.60		
2v0cA	878	49.75		
2c0hA	353	49.87	c.1.8.3	129594
2uv0E	175	50.66		
1vytE	25	53.82	j.68.1.1	108912
1kte	105	54.52		
1ac5A	483	54.92	c.69.1.5	34653
3inpA	246	58.23		
2cygA	312	60.32	c.1.8.3	131025
2eg2A	112	61.31		
2ggrA	76	62.39		
2f2gA	221	63.04	a.132.1.3	132816
3dshA	246	63.08		
1gnkA	112	64.04	d.58.5.1	39073
3n0lA	417	65.28		
3gw4A	203	65.80		
2z6oA	172	66.59		
1ur4A	399	68.31	c.1.8.3	113402
3dcoA	451	68.57		
1wosA	364	69.09	b.44.2.1,d.250.1.1	109468,109469
2ooqA	286	69.11		
3ctlA	231	69.66		
1vpt	348	70.16		
3ezzA	144	70.19		
3adlA	88	70.58		
1mzbA	136	72.79	a.4.5.42	91497
2ga9A	297	73.32	c.66.1.25	134885
1hlbA	158	73.42	a.1.1.2	15625
3b9eA	584	74.51		
2o66A	135	75.41		
2gw8A	114	76.15		
3mu9A	171	76.89		
1rtwA	220	78.52	a.132.1.3	97823
2kqzA	155	79.76		
3cz8A	319	81.77		
3dkxA	210	83.77		
3l55A	353	84.51		
2jtvA	65	86.88