# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2w91A	653	6.502		
1gxmA	332	8.284	a.102.5.1	76371
1yx2A	365	11.56		
2c0hA	353	12.69	c.1.8.3	129594
1vlyA	338	13.58	b.44.2.1,d.250.1.1	108871,108872
3a8jA	364	18.84		
3a8kA	364	19.61		
1cipA	353	19.74	a.66.1.1,c.37.1.8	18210,32093
1vloA	381	19.96	b.44.2.1,d.250.1.1	108838,108839
2wbyA	990	20.00		
1om2A	95	21.40	a.23.4.1	16520
2w61A	555	23.60		
3e4zA	990	23.94		
3cx5A	431	25.72	d.185.1.1,d.185.1.1	157076,157077
1yz4A	160	26.85		
1pfvA	551	28.71	a.27.1.1,c.26.1.1,g.41.1.1	94660,94661,94662
2qorA	204	28.76		
1wt4A	73	29.71		
3hz8A	193	35.34		
3ix3A	173	37.57		
1qnrA	344	38.30	c.1.8.3	28834
3feyC	467	39.92		
1hjsA	332	40.29	c.1.8.3	83492
3cwwA	990	43.00		
3gw4A	203	45.75		
2o66A	135	46.12		
3cz8A	319	46.67		
2g3mA	693	47.28		
3bzqA	114	48.14		
1rtwA	220	48.28	a.132.1.3	97823
2v0cA	878	49.26		
1gnkA	112	49.57	d.58.5.1	39073
1o5kA	306	53.29	c.1.10.1	92504
1wsrA	375	53.85		
1mzbA	136	54.40	a.4.5.42	91497
2gw8A	114	54.42		
2eg2A	112	56.77		
1wrmA	165	56.81		
2hwjA	205	57.60	d.268.1.3	147421
3dvwA	193	60.84		
1wosA	364	60.96	b.44.2.1,d.250.1.1	109468,109469
1fmtA	314	61.82	b.46.1.1,c.65.1.1	25758,34174
3dcoA	451	62.78		
3ct7A	231	62.91		
3e11A	114	63.06	d.92.1.17	157969
1kte	105	64.24		
2avxA	171	64.83		
2ns1B	116	65.17	d.58.5.1	145694
2uv0E	175	66.12		
2f2gA	221	68.30	a.132.1.3	132816
2ooqA	286	69.89		
2x6mA	126	73.47		
1sfuA	75	74.51	a.4.5.19	105503
3inpA	246	74.93		
2ga9A	297	75.45	c.66.1.25	134885
2j9cA	119	75.88		
2zxdA	455	77.22		
1ac5A	483	78.58	c.69.1.5	34653
3dshA	246	78.93		
1kb9A	431	79.37	d.185.1.1,d.185.1.1	77311,77312
3llvA	141	81.29		
1vfjA	116	81.66	d.58.5.1	113637
3l55A	353	83.63		
1vpt	348	83.67		
3n0lA	417	84.67		
3maxA	367	86.29		
2k5fA	105	87.23		
3ciwA	348	87.78		
3adlA	88	87.88		
3mhyA	112	88.46