# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1cipA	353	5.832	a.66.1.1,c.37.1.8	18210,32093
1gxmA	332	7.468	a.102.5.1	76371
2hwjA	205	11.30	d.268.1.3	147421
2w91A	653	13.23		
1yz4A	160	19.03		
1om2A	95	22.18	a.23.4.1	16520
1pfvA	551	22.95	a.27.1.1,c.26.1.1,g.41.1.1	94660,94661,94662
2wbyA	990	29.34		
1wt4A	73	31.76		
1vlyA	338	32.62	b.44.2.1,d.250.1.1	108871,108872
1rtwA	220	33.37	a.132.1.3	97823
1yx2A	365	35.44		
2v0cA	878	36.95		
1wrmA	165	37.99		
3e4zA	990	38.46		
1vloA	381	38.84	b.44.2.1,d.250.1.1	108838,108839
3mu9A	171	41.32		
3e11A	114	47.63	d.92.1.17	157969
2f2gA	221	49.30	a.132.1.3	132816
3feyC	467	52.67		
2c0hA	353	53.25	c.1.8.3	129594
1ac5A	483	55.31	c.69.1.5	34653
3gw4A	203	55.63		
1vytE	25	56.40	j.68.1.1	108912
3a8jA	364	59.00		
3cwwA	990	59.18		
3cx5A	431	59.44	d.185.1.1,d.185.1.1	157076,157077
3a8kA	364	60.62		
2cygA	312	60.99	c.1.8.3	131025
3cx8A	338	66.43		
3ct7A	231	68.10		
2ooqA	286	71.37		
1kte	105	72.56		
3n0lA	417	72.64		
1hn0A	1021	73.17	a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2	83616,83617,83618,83619
2jtvA	65	78.56		
3ix3A	173	79.58		
3ezzA	144	81.25		
2qorA	204	82.34		
1bli	483	85.47		
2eg2A	112	87.37		
1vpt	348	88.37		
3hkeA	451	89.67