# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1c7sA 858 0.8766 b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1w7jA 795 2.014 b.34.3.1,c.37.1.9 120688,120689 2ouiA 360 2.761 3myvA 454 4.669 3fpcA 352 4.706 3dshA 246 6.299 3fw6A 534 6.332 3m46A 666 10.14 3hv0A 393 10.53 1dpeA 507 10.56 c.94.1.1 35799 1d0cA 444 11.61 d.174.1.1 64769 1f82A 424 11.63 d.92.1.7 40307 3fg1A 696 13.43 1yz4A 160 13.45 2cygA 312 14.22 c.1.8.3 131025 1nh1A 330 14.55 e.45.1.1 91871 3e4zA 990 15.20 2vnlA 151 15.27 3hdiA 421 16.30 2o36A 674 17.42 3mcxA 477 18.65 3fceA 512 18.65 3hrjA 439 18.89 2p10A 286 19.44 c.1.12.9 149144 3a8xA 345 19.73 1ac5A 483 20.21 c.69.1.5 34653 1qh4A 380 21.79 a.83.1.1,d.128.1.2 18462,41197 2wbyA 990 21.90 2hwjA 205 21.99 d.268.1.3 147421 2qorA 204 22.38 3fg4A 696 22.67 1j5sA 463 23.10 c.1.9.8 71580 1kblA 873 24.23 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1sqsA 242 27.43 c.23.5.5 98968 1qnrA 344 27.47 c.1.8.3 28834 2avxA 171 29.13 3mu9A 171 29.31 1zy9A 564 31.48 b.30.5.11,c.1.8.13 125813,125814 1u5pA 216 33.59 a.7.1.1,a.7.1.1 113046,113047 2iucA 375 33.77 3c0kA 396 33.84 1oewA 329 35.53 b.50.1.2 86924 1om2A 95 35.87 a.23.4.1 16520 3mkkA 666 36.47 2qcoA 210 37.45 3crrA 323 37.63 3n4eA 393 37.76 3fg3A 696 38.88 1qg4A 216 39.25 c.37.1.8 32035 1qhtA 775 39.68 c.55.3.5,e.8.1.1 33722,43011 1m7vA 363 40.43 d.174.1.1 78748 1qysA 106 40.68 k.41.1.1 96603 3ii1A 535 41.15 1x9mA 698 41.27 c.55.3.5,e.8.1.1 114999,115000 3fwaA 497 42.50 3iiiA 560 42.97 3bh4A 483 43.90 1wt4A 73 46.87 2ga9A 297 47.25 c.66.1.25 134885 2w8tA 427 48.15 3gc9A 370 49.20 2aznA 219 50.11 c.71.1.2 127608 3medB 440 50.23 3dd6A 255 50.56 2d5wA 603 50.60 1bu6O 501 52.02 c.55.1.4,c.55.1.4 33499,33500 1zowA 313 52.06 1qqp1 213 53.72 2zosA 249 54.87 1r9oA 477 56.07 a.104.1.1 104878 2gtqA 867 56.66 1wrmA 165 56.67 3dwbA 670 57.50 1vpt 348 58.83 3f4tA 226 59.26 3gw4A 203 59.60 1wp1A 474 59.93 f.5.1.1 114778 2vh3A 113 60.11 3dq0A 516 60.26 3igzB 561 61.07 1jlwA 219 61.57 a.45.1.1,c.47.1.5 71741,71742 3kapA 147 62.59 2vunA 386 63.63 1gppA 237 63.71 b.86.1.2 76262 3iaeA 570 66.38 3e11A 114 66.95 d.92.1.17 157969 3c0iA 351 67.55 2x7nD 56 68.22 1u6rA 380 69.21 a.83.1.1,d.128.1.2 119600,119601 2hq6A 185 69.50 1q2lA 939 69.50 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 3kt7A 633 69.86 2v1tA 73 69.98 1jqoA 970 70.65 c.1.12.3 77160 1huxA 270 71.24 c.55.1.5 61278 2wgpA 190 71.24 1bifA 469 71.29 c.37.1.7,c.60.1.4 31961,34003 3a5iA 389 71.83 1wpgA 994 71.92 b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1 114806,114807,114808,114809 2px2A 269 72.32 3dvxA 196 72.68 2xdtA 897 72.89 2nt2A 145 73.27 2g47A 990 73.35 3ix3A 173 73.50 2ggrA 76 73.95 3iv0A 481 73.99 1k55A 246 74.37 e.3.1.1 68156 1gl6A 436 76.00 c.37.1.11 70259 1rg9A 383 77.47 d.130.1.1,d.130.1.1,d.130.1.1 97427,97428,97429 3ctlA 231 77.56 3edtB 283 78.86 1ppjA 446 79.86 d.185.1.1,d.185.1.1 104252,104253 1ar61 302 80.72 3l2eA 374 81.25 1sk7A 198 81.29 a.132.1.2 105671 2pgfA 371 81.58 1rtwA 220 82.05 a.132.1.3 97823 3niwA 279 82.32 2uv0E 175 86.33 2dqsA 995 86.51 3gbxA 420 86.59 2imgA 151 86.73 2viaA 405 86.95 2bvlA 543 88.60 c.68.1.22 146219 1hlbA 158 89.02 a.1.1.2 15625 3kpiA 434 89.10