# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1cipA	353	6.575	a.66.1.1,c.37.1.8	18210,32093
1gxmA	332	7.957	a.102.5.1	76371
1pfvA	551	14.79	a.27.1.1,c.26.1.1,g.41.1.1	94660,94661,94662
2hwjA	205	15.32	d.268.1.3	147421
2wbyA	990	15.97		
1yz4A	160	18.03		
3e4zA	990	18.39		
1om2A	95	22.41	a.23.4.1	16520
1ur4A	399	23.94	c.1.8.3	113402
2w91A	653	25.95		
1wrmA	165	26.78		
1wt4A	73	28.24		
3ct7A	231	30.08		
3cwwA	990	30.28		
1hjsA	332	30.62	c.1.8.3	83492
1ac5A	483	33.37	c.69.1.5	34653
2f2gA	221	35.73	a.132.1.3	132816
2c0hA	353	37.84	c.1.8.3	129594
3ix3A	173	40.96		
3ctlA	231	41.91		
3e11A	114	45.20	d.92.1.17	157969
2cygA	312	47.18	c.1.8.3	131025
3cx5A	431	50.70	d.185.1.1,d.185.1.1	157076,157077
2qorA	204	52.88		
1u5pA	216	54.47	a.7.1.1,a.7.1.1	113046,113047
3dshA	246	55.75		
2v0cA	878	57.34		
2avxA	171	58.62		
1vytE	25	60.32	j.68.1.1	108912
3hz8A	193	62.22		
1vloA	381	63.53	b.44.2.1,d.250.1.1	108838,108839
3n10A	179	63.87		
3l55A	353	67.13		
3b9eA	584	70.53		
3ezzA	144	73.31		
1mzbA	136	73.57	a.4.5.42	91497
2ooqA	286	73.73		
2ggrA	76	75.40		
2jtvA	65	75.56		
2v1tA	73	75.95		
1vlyA	338	78.57	b.44.2.1,d.250.1.1	108871,108872
1yx2A	365	78.76		
1o5kA	306	80.05	c.1.10.1	92504
3bzqA	114	80.73		
3dhvA	512	80.92		
3cz8A	319	81.30		
1hlbA	158	81.42	a.1.1.2	15625
3fg1A	696	81.73		
2imgA	151	82.13		
3ciwA	348	82.96		
3inpA	246	83.32		
2x6mA	126	83.57		
1qnrA	344	84.42	c.1.8.3	28834
2vh3A	113	85.89		
1gnkA	112	86.53	d.58.5.1	39073
2uv0E	175	87.51		
3dvwA	193	87.79		
2g47A	990	88.67		
2eg2A	112	88.68