# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1cipA	353	3.089	a.66.1.1,c.37.1.8	18210,32093
2hwjA	205	3.368	d.268.1.3	147421
1gxmA	332	6.616	a.102.5.1	76371
2w91A	653	9.567		
1pfvA	551	14.56	a.27.1.1,c.26.1.1,g.41.1.1	94660,94661,94662
1yz4A	160	16.47		
2wbyA	990	26.14		
1ac5A	483	27.27	c.69.1.5	34653
3cx5A	431	27.62	d.185.1.1,d.185.1.1	157076,157077
2c0hA	353	27.75	c.1.8.3	129594
1bli	483	28.99		
1om2A	95	29.25	a.23.4.1	16520
2cygA	312	29.88	c.1.8.3	131025
2f2gA	221	31.61	a.132.1.3	132816
3e4zA	990	34.80		
3ix3A	173	34.82		
1rtwA	220	36.50	a.132.1.3	97823
1wt4A	73	40.53		
3e11A	114	42.22	d.92.1.17	157969
3k1hA	158	42.70		
2w61A	555	42.88		
1yx2A	365	42.89		
2v0cA	878	44.42		
3feyC	467	44.48		
2avxA	171	47.47		
1xu2R	47	47.75	g.24.1.2	116042
1vloA	381	48.08	b.44.2.1,d.250.1.1	108838,108839
1wrmA	165	48.37		
3dcoA	451	50.13		
3a8jA	364	52.87		
2z6oA	172	53.21		
2qorA	204	54.37		
3cwwA	990	56.24		
3a8kA	364	56.65		
1kte	105	58.19		
1vlyA	338	59.79	b.44.2.1,d.250.1.1	108871,108872
3bzqA	114	60.11		
2kqzA	155	60.45		
1vytE	25	61.35	j.68.1.1	108912
1gnkA	112	64.38	d.58.5.1	39073
1vpt	348	64.72		
2ooqA	286	66.72		
2eg2A	112	67.63		
3dshA	246	68.86		
3kgdA	358	69.51		
3n0lA	417	70.12		
2o66A	135	71.69		
3cz8A	319	74.19		
2gw8A	114	75.76		
1hjsA	332	77.16	c.1.8.3	83492
1sfuA	75	77.89	a.4.5.19	105503
3ggyA	193	84.33		
1goiA	499	84.98	b.72.2.1,c.1.8.5,d.26.3.1	65413,65414,65415
2ga9A	297	85.69	c.66.1.25	134885
3hkeA	451	88.29