# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1cipA	353	3.404	a.66.1.1,c.37.1.8	18210,32093
2hwjA	205	4.767	d.268.1.3	147421
1gxmA	332	4.869	a.102.5.1	76371
1pfvA	551	11.24	a.27.1.1,c.26.1.1,g.41.1.1	94660,94661,94662
2w91A	653	11.54		
2wbyA	990	18.43		
1ac5A	483	21.38	c.69.1.5	34653
1om2A	95	23.37	a.23.4.1	16520
1yz4A	160	27.93		
3e4zA	990	28.56		
2c0hA	353	31.50	c.1.8.3	129594
1vlyA	338	32.16	b.44.2.1,d.250.1.1	108871,108872
3dcoA	451	33.34		
1kte	105	33.58		
2f2gA	221	36.25	a.132.1.3	132816
2cygA	312	36.37	c.1.8.3	131025
3feyC	467	36.39		
1wt4A	73	38.60		
1rtwA	220	39.67	a.132.1.3	97823
1yx2A	365	40.23		
3cwwA	990	41.38		
3kgdA	358	45.34		
2gtqA	867	47.15		
3cx5A	431	47.20	d.185.1.1,d.185.1.1	157076,157077
1vloA	381	47.77	b.44.2.1,d.250.1.1	108838,108839
1wrmA	165	52.20		
2z6oA	172	53.23		
2v0cA	878	53.49		
3e11A	114	53.97	d.92.1.17	157969
1xu2R	47	56.89	g.24.1.2	116042
3ix3A	173	59.06		
2qorA	204	59.33		
1vytE	25	60.27	j.68.1.1	108912
3bzqA	114	60.50		
3a8jA	364	60.56		
3ct7A	231	61.04		
3f1cA	246	62.01		
3hkeA	451	62.01		
2avxA	171	63.36		
1bli	483	63.57		
2kqzA	155	64.53		
2jtvA	65	68.96		
1vpt	348	71.94		
2eg2A	112	72.45		
3k1hA	158	72.69		
2gw8A	114	73.66		
3a8kA	364	74.86		
1gnkA	112	75.08	d.58.5.1	39073
3ciwA	348	78.08		
1sfuA	75	78.47	a.4.5.19	105503
3cx8A	338	79.27		
2o66A	135	83.08		
2ooqA	286	84.51		
3l55A	353	84.65		
1o5kA	306	85.09	c.1.10.1	92504
3cz8A	319	86.34		
3mu9A	171	86.35		
3dshA	246	86.71		
3hz8A	193	88.77