# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1cipA	353	5.619	a.66.1.1,c.37.1.8	18210,32093
3hwuA	147	16.69		
3dshA	246	22.93		
2z51A	154	29.51		
1yz4A	160	30.55		
3dcoA	451	34.92		
2jtvA	65	35.20		
1nr3A	122	35.31	d.236.1.1	86092
1sfuA	75	41.31	a.4.5.19	105503
2avxA	171	44.04		
1ffxA	451	46.57	i.10.1.1	46007
1gxmA	332	46.66	a.102.5.1	76371
2govA	195	48.37	d.60.1.4	135447
2ggrA	76	48.51		
2imgA	151	48.95		
2f2gA	221	58.71	a.132.1.3	132816
3hz8A	193	59.54		
2vh3A	113	65.19		
3k6rA	278	65.46		
1pfvA	551	75.68	a.27.1.1,c.26.1.1,g.41.1.1	94660,94661,94662
2c9oA	456	78.30		
1d3yA	301	80.58	e.12.1.1	43252
3cm3A	176	83.52		
3bs3A	76	83.58		
1rxdA	159	83.66	c.45.1.1	111959
3bzqA	114	86.21		
1wrmA	165	87.52		
2pvqA	201	87.94