# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3kalA 499 3.160 1rxdA 159 7.722 c.45.1.1 111959 1m5wA 243 8.963 c.1.24.1 84836 1wt4A 73 9.506 1guxA 218 9.543 a.74.1.3 18388 2odtX 328 9.947 1fchA 368 11.55 a.118.8.1 19212 1kb9A 431 11.59 d.185.1.1,d.185.1.1 77311,77312 1w8sA 263 14.12 c.1.10.1 120744 1rd5A 262 14.30 c.1.2.4 111772 2eg2A 112 14.40 2v1tA 73 14.60 3guiA 164 16.03 3inpA 246 16.29 3en0A 291 17.23 1xqrA 296 17.73 a.118.1.21 122241 2fliA 220 18.06 c.1.2.2 133714 2gduA 504 18.46 b.71.1.1,c.1.8.1 135032,135033 3hdiA 421 19.19 1d3gA 367 19.77 c.1.4.1 28600 1jndA 420 21.24 c.1.8.5,d.26.3.1 71757,71758 3biqA 467 21.93 1tqjA 230 22.62 c.1.2.2 107228 2f7tA 227 22.76 2imgA 151 23.47 1jeyB 565 24.37 b.131.1.2,c.62.1.4 90372,90373 1q1fA 151 24.77 a.1.1.2 104476 3hgjA 349 24.87 2rckA 225 27.07 3eoqA 406 27.52 2vdwB 287 28.86 2qulA 290 30.38 3lpzA 336 31.29 2gw8A 114 31.64 3mtcA 313 32.32 1kr7A 110 32.99 a.1.1.4 72890 1hlbA 158 33.81 a.1.1.2 15625 3lpmA 259 33.96 3bzqA 114 36.81 1mw7A 240 37.05 e.39.1.1 79557 1vmiA 355 37.98 c.77.1.5 113678 2r7gA 347 38.33 a.74.1.3,a.74.1.3 151637,151638 1cg5B 141 39.74 a.1.1.2 15585 2olpA 152 40.72 2bogX 286 41.26 2cz4A 119 41.42 d.58.5.1 131035 1vfjA 116 42.34 d.58.5.1 113637 3kvlA 390 43.41 1elwA 118 44.37 a.118.8.1 19207 1gnkA 112 44.82 d.58.5.1 39073 2xdyA 145 45.34 1oj6A 151 45.46 a.1.1.2 93088 2efeA 267 45.47 1hlb 158 47.95 3ct7A 231 48.83 137lA 164 49.73 d.2.1.3 36791 2wqhA 125 50.81 2g0wA 296 52.67 c.1.15.4 134503 2q8xA 331 52.67 1om2A 95 53.43 a.23.4.1 16520 3ctlA 231 54.04 1zybA 232 56.04 a.4.5.4,b.82.3.2 125815,125816 1r7aA 504 56.39 b.71.1.1,c.1.8.1 97192,97193 3ix3A 173 56.54 1ceo 343 56.89 119l 164 57.63 176lA 164 58.05 d.2.1.3 36942 180lA 164 58.18 d.2.1.3 36867 3bc1A 195 58.43 2pii 112 58.87 1ppjB 439 59.42 d.185.1.1,d.185.1.1 104254,104255 2ns1B 116 59.76 d.58.5.1 145694 3mhyA 112 60.23 3h9cA 547 61.11 3hxkA 276 61.22 2dc3A 193 61.94 3cx5A 431 62.08 d.185.1.1,d.185.1.1 157076,157077 1i2mA 216 64.57 c.37.1.8 61568 1ohlA 342 68.03 c.1.10.3 87035 2j9cA 119 69.67 174lA 164 71.26 d.2.1.3 36956 2ox4A 403 71.67 1o08A 221 71.90 c.108.1.6 86525 175lA 164 75.86 d.2.1.3 36924 1bbhA 131 77.55 a.24.3.2 16546 1w7jA 795 77.92 b.34.3.1,c.37.1.9 120688,120689 3fniA 159 78.95 1otgA 125 80.23 d.80.1.2 39831 1yspA 181 80.41 1ad1A 266 82.57 c.1.21.1 29668 2hgsA 474 82.67 c.30.1.4,d.142.1.6 31722,75997 1yhuB 144 83.42 3fgnA 251 84.19 2inbA 140 84.51 c.52.1.32 147738 1k28A 584 84.53 b.40.8.1,b.108.1.2,d.2.1.3 68049,68050,68051 2rg4A 216 85.54 3hm4A 156 85.57 1w8rA 263 86.90 c.1.10.1 120734 1uumA 372 86.91 c.1.4.1 100010 1zz1A 369 90.00