# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1woyA	500	5.727	a.27.1.1,c.26.1.1	121130,121131
1zzwA	149	11.90		
2hwjA	205	14.23	d.268.1.3	147421
2w91A	653	15.65		
1jndA	420	16.98	c.1.8.5,d.26.3.1	71757,71758
2v1tA	73	17.25		
1wosA	364	19.27	b.44.2.1,d.250.1.1	109468,109469
1wt4A	73	19.42		
3ix3A	173	26.53		
1khoA	370	26.72	a.124.1.1,b.12.1.3	72489,72490
3gw4A	203	28.60		
3fg3A	696	30.07		
3fg1A	696	30.90		
2avxA	171	31.14		
1yjsA	419	31.27	c.67.1.4	123461
3e4zA	990	31.73		
3cx5A	431	32.53	d.185.1.1,d.185.1.1	157076,157077
3cwwA	990	32.63		
1wrmA	165	33.11		
1goiA	499	34.45	b.72.2.1,c.1.8.5,d.26.3.1	65413,65414,65415
1e6pA	499	37.80	b.72.2.1,c.1.8.5,d.26.3.1	59314,59315,59316
1wthD	391	39.42	b.106.1.1,b.106.1.1	121268,121269
2eg2A	112	39.50		
1yz4A	160	41.45		
1om2A	95	41.62	a.23.4.1	16520
1yx2A	365	44.96		
2wbyA	990	45.19		
1azsC	388	45.85	a.66.1.1,c.37.1.8	18203,32086
1x6mA	196	47.08	b.88.1.4	114920
2uv0E	175	48.18		
1vlyA	338	48.68	b.44.2.1,d.250.1.1	108871,108872
3bzqA	114	48.82		
1vytE	25	48.83	j.68.1.1	108912
1gnkA	112	49.30	d.58.5.1	39073
1qnrA	344	49.46	c.1.8.3	28834
1nrkA	328	51.25	b.44.2.1,d.250.1.1	92089,92090
2imgA	151	51.53		
2gw8A	114	52.35		
1zckA	154	53.66		
3e4aA	1019	53.99		
2qsaA	109	54.44		
1zclA	180	57.27		
1pfvA	551	57.75	a.27.1.1,c.26.1.1,g.41.1.1	94660,94661,94662
1a8h	500	59.71		
2g47A	990	60.31		
2q8xA	331	61.42		
2gtqA	867	61.59		
2bs9A	503	63.70	b.71.1.2,c.1.8.3	129062,129063
3f2kA	226	63.87		
3hvdA	548	65.03		
2o66A	135	66.31		
2z6oA	172	70.81		
1wsrA	375	73.47		
2dvyA	226	74.56		
1kb9A	431	76.78	d.185.1.1,d.185.1.1	77311,77312
3ibxA	221	77.97		
2pii	112	78.95		
3gbvA	304	80.90		
1vloA	381	83.07	b.44.2.1,d.250.1.1	108838,108839
2acmA	66	84.44		
3giwA	277	85.99		
2j9cA	119	89.28		
2ns1B	116	89.59	d.58.5.1	145694