# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jndA	420	10.35	c.1.8.5,d.26.3.1	71757,71758
2w91A	653	10.69		
1zckA	154	11.91		
1zclA	180	13.74		
1wrmA	165	20.43		
1wt4A	73	23.42		
2v1tA	73	23.91		
3ix3A	173	25.88		
3fg1A	696	26.84		
2avxA	171	27.21		
3fg3A	696	27.69		
1yz4A	160	30.62		
1woyA	500	30.92	a.27.1.1,c.26.1.1	121130,121131
2imgA	151	31.77		
1zzwA	149	31.92		
3gw4A	203	33.36		
2uv0E	175	37.47		
2eg2A	112	37.68		
3i1mM	118	37.73		
1wosA	364	39.04	b.44.2.1,d.250.1.1	109468,109469
3bzqA	114	39.69		
2o66A	135	40.45		
2qsaA	109	41.78		
3cfbB	213	42.56		
1e8gA	560	43.95	d.58.32.1,d.145.1.1	39455,41718
1yjsA	419	44.80	c.67.1.4	123461
2zxdA	455	44.81		
1gnkA	112	46.04	d.58.5.1	39073
2hwjA	205	47.45	d.268.1.3	147421
1qnrA	344	47.85	c.1.8.3	28834
3cwwA	990	48.13		
1i8kB	124	50.98	b.1.1.1	71131
1wsrA	375	51.03		
3cx5A	431	52.32	d.185.1.1,d.185.1.1	157076,157077
2gw8A	114	52.59		
2hwzH	227	54.75		
1vlyA	338	56.84	b.44.2.1,d.250.1.1	108871,108872
1j83A	180	57.04	b.18.1.12	66430
2ns1B	116	59.34	d.58.5.1	145694
1k94A	165	60.05	a.39.1.8	68333
3e4zA	990	60.66		
3mbxH	230	62.45		
3e19A	77	62.62		
3llvA	141	62.92		
1sfuA	75	63.91	a.4.5.19	105503
2aefA	234	66.95		
1ohcA	348	67.80	c.45.1.1,c.45.1.1	87009,87010
1om2A	95	70.65	a.23.4.1	16520
1e6pA	499	70.91	b.72.2.1,c.1.8.5,d.26.3.1	59314,59315,59316
2czcA	334	71.00	d.81.1.1,c.2.1.3	131044,145052
2j9cA	119	71.93		
2pm7A	399	72.75		
2vtfA	626	73.29		
2gcxA	75	73.33	b.34.1.2	147110
1nrkA	328	74.46	b.44.2.1,d.250.1.1	92089,92090
1t2jA	116	74.77		
1ol0A	121	76.29	b.1.1.1	93296
2k5fA	105	78.04		
3mhyA	112	78.49		
2h3jA	75	80.77	b.34.1.2	147217
1vytE	25	80.89	j.68.1.1	108912
3h87A	156	83.51		
2pii	112	85.37		
3l8bA	906	85.45		
1ee5A	424	85.59	a.118.1.1	19132
2yx0A	342	85.86		
1bj4A	470	87.26	c.67.1.4	34479
1yx2A	365	88.04