# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hwjA	205	6.807	d.268.1.3	147421
1zzwA	149	9.716		
2w91A	653	10.97		
1wrmA	165	16.40		
1woyA	500	17.29	a.27.1.1,c.26.1.1	121130,121131
1yz4A	160	19.93		
3fg1A	696	22.27		
2v1tA	73	24.55		
3fg3A	696	26.29		
3ix3A	173	26.49		
3gw4A	203	28.17		
1e6pA	499	28.66	b.72.2.1,c.1.8.5,d.26.3.1	59314,59315,59316
1wt4A	73	29.48		
2imgA	151	36.15		
1goiA	499	36.21	b.72.2.1,c.1.8.5,d.26.3.1	65413,65414,65415
3cwwA	990	38.79		
2eg2A	112	40.61		
1jndA	420	41.08	c.1.8.5,d.26.3.1	71757,71758
3gbvA	304	42.87		
1zckA	154	44.40		
1vytE	25	49.91	j.68.1.1	108912
1zcbA	362	51.78	a.66.1.1,c.37.1.8	124901,124902
1om2A	95	51.96	a.23.4.1	16520
2uv0E	175	57.74		
1m40A	263	59.06	e.3.1.1	74437
3e4aA	1019	62.19		
1gnkA	112	63.39	d.58.5.1	39073
2avxA	171	67.01		
2g47A	990	67.80		
1yjsA	419	68.52	c.67.1.4	123461
1rtwA	220	68.80	a.132.1.3	97823
1wosA	364	69.44	b.44.2.1,d.250.1.1	109468,109469
2qsaA	109	75.23		
1xu2R	47	75.85	g.24.1.2	116042
1vlyA	338	76.01	b.44.2.1,d.250.1.1	108871,108872
2a2mA	258	79.78	a.132.1.3	126039
2z6oA	172	80.07		
1cs3A	116	80.89	d.42.1.1	38632
1wthD	391	81.82	b.106.1.1,b.106.1.1	121268,121269
1khoA	370	82.65	a.124.1.1,b.12.1.3	72489,72490
2wbyA	990	86.49		
3cx5A	431	86.55	d.185.1.1,d.185.1.1	157076,157077
3bzqA	114	87.16		
3cz8A	319	89.58