# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1zzwA	149	10.33		
1woyA	500	15.68	a.27.1.1,c.26.1.1	121130,121131
2w91A	653	16.19		
2hwjA	205	16.81	d.268.1.3	147421
1wrmA	165	16.95		
1yz4A	160	19.22		
2v1tA	73	22.70		
3gw4A	203	25.37		
1zckA	154	25.38		
1wt4A	73	27.76		
2imgA	151	30.15		
3fg1A	696	30.23		
3fg3A	696	35.45		
3ix3A	173	38.75		
3cwwA	990	40.63		
1e6pA	499	40.87	b.72.2.1,c.1.8.5,d.26.3.1	59314,59315,59316
1jndA	420	41.95	c.1.8.5,d.26.3.1	71757,71758
1khoA	370	48.29	a.124.1.1,b.12.1.3	72489,72490
1goiA	499	49.13	b.72.2.1,c.1.8.5,d.26.3.1	65413,65414,65415
2eg2A	112	49.25		
1vytE	25	50.83	j.68.1.1	108912
1om2A	95	52.59	a.23.4.1	16520
1rtwA	220	56.87	a.132.1.3	97823
3e4aA	1019	59.86		
2jtvA	65	61.61		
3gbvA	304	61.88		
1wthD	391	65.81	b.106.1.1,b.106.1.1	121268,121269
2czcA	334	66.51	d.81.1.1,c.2.1.3	131044,145052
1zcbA	362	67.93	a.66.1.1,c.37.1.8	124901,124902
2g47A	990	67.96		
3c8dA	403	73.04	b.1.18.20,c.69.1.2	156025,156026
1m40A	263	73.97	e.3.1.1	74437
3cx5A	431	75.05	d.185.1.1,d.185.1.1	157076,157077
3i1mM	118	75.69		
2qsaA	109	76.79		
2uv0E	175	78.45		
2z6oA	172	78.71		
1qnrA	344	79.32	c.1.8.3	28834
2a2mA	258	81.95	a.132.1.3	126039
1yjsA	419	85.14	c.67.1.4	123461
1vlyA	338	86.68	b.44.2.1,d.250.1.1	108871,108872
2wbyA	990	88.53