# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hwjA	205	12.98	d.268.1.3	147421
1zzwA	149	13.58		
1woyA	500	17.75	a.27.1.1,c.26.1.1	121130,121131
2w91A	653	19.13		
3fg1A	696	20.51		
1wrmA	165	20.99		
3fg3A	696	23.29		
2v1tA	73	24.04		
1wt4A	73	28.47		
3ix3A	173	28.89		
1yz4A	160	31.49		
3gw4A	203	33.39		
3cwwA	990	39.13		
1e6pA	499	39.74	b.72.2.1,c.1.8.5,d.26.3.1	59314,59315,59316
2imgA	151	40.97		
1goiA	499	42.93	b.72.2.1,c.1.8.5,d.26.3.1	65413,65414,65415
1vytE	25	45.77	j.68.1.1	108912
3gbvA	304	45.81		
1wthD	391	48.21	b.106.1.1,b.106.1.1	121268,121269
1om2A	95	48.76	a.23.4.1	16520
1zcbA	362	48.81	a.66.1.1,c.37.1.8	124901,124902
1jndA	420	53.11	c.1.8.5,d.26.3.1	71757,71758
1zckA	154	53.21		
2eg2A	112	54.51		
1cs3A	116	56.81	d.42.1.1	38632
2z6oA	172	63.76		
2g47A	990	64.88		
2qsaA	109	65.17		
1rtwA	220	65.21	a.132.1.3	97823
3e4aA	1019	66.75		
2uv0E	175	67.19		
1yjsA	419	67.53	c.67.1.4	123461
2a2mA	258	67.79	a.132.1.3	126039
2wbyA	990	68.16		
1vlyA	338	79.34	b.44.2.1,d.250.1.1	108871,108872
3c8dA	403	79.59	b.1.18.20,c.69.1.2	156025,156026
2jtvA	65	80.78		
1wosA	364	82.70	b.44.2.1,d.250.1.1	109468,109469
3cx5A	431	82.93	d.185.1.1,d.185.1.1	157076,157077
1khoA	370	83.42	a.124.1.1,b.12.1.3	72489,72490
1gnkA	112	83.67	d.58.5.1	39073
2avxA	171	85.68		
2acmA	66	86.07		
3i1mM	118	88.31