# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eg2A	112	13.12		
1jndA	420	13.47	c.1.8.5,d.26.3.1	71757,71758
2v1tA	73	16.29		
1zzwA	149	18.39		
3ix3A	173	18.64		
2gw8A	114	19.04		
1wt4A	73	19.49		
3bzqA	114	19.54		
1m0wA	491	19.95	c.30.1.4,d.142.1.6	78363,78364
3mhyA	112	20.18		
2o66A	135	22.15		
1gnkA	112	22.21	d.58.5.1	39073
2avxA	171	24.76		
2j9cA	119	24.93		
2uv0E	175	27.64		
1kteA	105	28.20	c.47.1.1	32771
2vh3A	113	32.86		
3cz8A	319	33.66		
2ns1B	116	34.84	d.58.5.1	145694
2pii	112	35.12		
3ibxA	221	38.54		
1e6pA	499	47.17	b.72.2.1,c.1.8.5,d.26.3.1	59314,59315,59316
3fg1A	696	47.60		
2hzfA	114	56.07		
1wrmA	165	57.69		
3bpjA	80	62.01		
1xi3A	215	62.99	c.1.3.1	109601
3gbvA	304	65.17		
1itg	166	67.58		
1zcbA	362	68.15	a.66.1.1,c.37.1.8	124901,124902
1sfuA	75	68.56	a.4.5.19	105503
3cx5A	431	70.46	d.185.1.1,d.185.1.1	157076,157077
2imgA	151	71.59		
1yz4A	160	74.62		
2wojA	354	80.62		
1q1fA	151	81.11	a.1.1.2	104476
3c25A	383	83.57		
1azsC	388	83.73	a.66.1.1,c.37.1.8	18203,32086
1kte	105	84.74		
2qsaA	109	84.75		
2acmA	66	85.75		
1dmmA	131	86.89	d.17.4.3	38114
1vfjA	116	86.91	d.58.5.1	113637
2jrbA	88	87.60