# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hwjA	205	5.419	d.268.1.3	147421
1zzwA	149	8.967		
1woyA	500	12.99	a.27.1.1,c.26.1.1	121130,121131
3fg3A	696	15.45		
2v1tA	73	17.82		
3fg1A	696	18.06		
3cwwA	990	19.12		
1wrmA	165	19.62		
3e4zA	990	19.90		
1wt4A	73	20.68		
1jndA	420	23.10	c.1.8.5,d.26.3.1	71757,71758
1yjsA	419	23.15	c.67.1.4	123461
3ix3A	173	23.93		
1yz4A	160	26.28		
1e6pA	499	30.36	b.72.2.1,c.1.8.5,d.26.3.1	59314,59315,59316
3e4aA	1019	30.84		
2g47A	990	30.89		
2avxA	171	32.15		
2imgA	151	34.07		
2czcA	334	34.20	d.81.1.1,c.2.1.3	131044,145052
2uv0E	175	34.42		
2wbyA	990	35.82		
2w91A	653	37.50		
2eg2A	112	41.06		
1qnrA	344	44.92	c.1.8.3	28834
3cx5A	431	45.24	d.185.1.1,d.185.1.1	157076,157077
2z6oA	172	46.09		
1zckA	154	47.84		
2a2mA	258	48.24	a.132.1.3	126039
1vytE	25	48.50	j.68.1.1	108912
3bzqA	114	50.75		
1om2A	95	50.83	a.23.4.1	16520
2qsaA	109	52.04		
1goiA	499	52.22	b.72.2.1,c.1.8.5,d.26.3.1	65413,65414,65415
1ywfA	296	52.52	c.45.1.5	124144
3gw4A	203	52.96		
2jtvA	65	53.00		
1f4lA	551	56.57	a.27.1.1,c.26.1.1,g.41.1.1	59648,59649,59650
3ibxA	221	56.68		
1gnkA	112	57.40	d.58.5.1	39073
2gw8A	114	61.56		
3i1mM	118	62.46		
2o66A	135	63.88		
1pfvA	551	64.49	a.27.1.1,c.26.1.1,g.41.1.1	94660,94661,94662
1a8h	500	69.91		
1khoA	370	70.19	a.124.1.1,b.12.1.3	72489,72490
1sfuA	75	73.93	a.4.5.19	105503
1rzmA	338	76.15	c.1.10.4	105137
1wosA	364	77.79	b.44.2.1,d.250.1.1	109468,109469
1ohcA	348	78.36	c.45.1.1,c.45.1.1	87009,87010
1m40A	263	81.62	e.3.1.1	74437
2pulA	397	88.08	d.144.1.6	149865
2pii	112	88.60		
1xu2R	47	89.13	g.24.1.2	116042