# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1cf2O 337 3.951 c.2.1.3,d.81.1.1 29994,39909 3fg1A 696 7.307 3fg3A 696 7.334 1dmtA 696 7.586 d.92.1.4 40296 1atg 231 7.804 2qqiA 318 8.398 b.18.1.2,b.18.1.2 151218,151219 3i0zA 389 9.99 1dekA 241 11.06 c.37.1.1 31842 1d0cA 444 11.06 d.174.1.1 64769 1yz4A 160 11.49 3f2iA 172 11.85 2hwjA 205 12.36 d.268.1.3 147421 1d2nA 272 12.68 c.37.1.20 32428 3ktnA 346 12.97 1df0A 700 13.26 a.39.1.8,b.14.1.1,d.3.1.3 17375,23674,37106 1c7sA 858 13.56 b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 3fozA 316 14.13 1zzwA 149 14.40 1d8wA 426 14.75 c.1.15.2 29394 2vnlA 151 15.33 2avxA 171 16.19 3m46A 666 16.34 3e4zA 990 16.82 2d5wA 603 17.53 2qt3A 403 19.79 1q15A 503 21.16 c.26.2.1,d.153.1.1 95538,95539 2w8tA 427 21.31 3hdiA 421 21.74 2v1tA 73 22.21 2z26A 347 22.47 2ga9A 297 22.52 c.66.1.25 134885 2bs9A 503 22.65 b.71.1.2,c.1.8.3 129062,129063 1ak0 270 22.92 1j79A 347 23.84 c.1.9.4 62675 3g7jA 219 24.13 3fg4A 696 27.26 1qqfA 277 27.31 a.102.4.4 18875 1qnrA 344 28.35 c.1.8.3 28834 2pajA 492 28.44 b.92.1.4,c.1.9.9 149344,149345 3dhuA 449 28.80 2vj8A 611 29.60 a.118.1.7,b.98.1.1,d.92.1.13 153183,153184,153185 1j9lA 247 29.88 c.106.1.1 62762 1wu7A 434 30.98 c.51.1.1,d.104.1.1 121275,121276 1zowA 313 31.42 1wrmA 165 32.63 1zy9A 564 32.89 b.30.5.11,c.1.8.13 125813,125814 3pmgA 561 32.91 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 2e7fA 262 32.99 3gw4A 203 33.82 1f46A 140 33.91 d.129.4.1 59643 1ew2A 513 36.26 c.76.1.1 59525 2eg6A 347 36.93 c.1.9.4 146826 2ok8A 316 37.80 2o36A 674 38.14 1qh4A 380 38.44 a.83.1.1,d.128.1.2 18462,41197 1ctn 540 38.52 2xgjA 1010 38.56 1c8zA 265 38.99 d.23.1.1 38375 1zcbA 362 39.80 a.66.1.1,c.37.1.8 124901,124902 3i2wA 290 39.93 1ee5A 424 40.79 a.118.1.1 19132 2v3gA 283 40.81 c.1.8.3 152457 3myvA 454 41.09 3l6uA 293 41.58 1u6rA 380 41.89 a.83.1.1,d.128.1.2 119600,119601 1jvsA 400 41.97 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 3hgjA 349 42.10 3kklA 244 42.69 2wbyA 990 47.05 3dmqA 968 47.14 2imgA 151 47.47 1qysA 106 48.89 k.41.1.1 96603 3eebA 209 49.05 2csgA 424 50.80 b.82.2.12 130768 1smd 496 51.22 3cqcA 270 54.01 3fvtA 320 54.14 1wt4A 73 54.42 3mznA 450 54.89 1tfjA 219 55.60 1zd0A 150 55.69 d.329.1.1 124927 1f4qA 165 57.22 a.39.1.8 17360 3k8nA 185 57.96 1vlqA 337 58.88 c.69.1.25 108848 1f0cA 305 59.12 e.1.1.1 42676 3ix3A 173 60.72 2g3wA 182 60.82 c.52.1.33 147077 1g1eB 89 62.59 a.59.1.1 17931 3knzA 366 62.68 3n0wA 379 62.88 1f82A 424 63.04 d.92.1.7 40307 2x7nD 56 64.54 1jpaA 312 65.03 d.144.1.7 67011 2wojA 354 65.32 1h1nA 305 65.37 c.1.8.3 70855 2i2cA 272 65.43 1cnvA 299 65.45 c.1.8.5 28989 1gadO 330 66.02 c.2.1.3,d.81.1.1 29950,39865 1dik 874 66.18 1nh1A 330 67.29 e.45.1.1 91871 3a5iA 389 67.88 3medB 440 68.06 1zckA 154 68.66 3isnC 560 68.81 2vh3A 113 68.87 3kxyA 133 71.96 2nqlA 388 72.90 1a8h 500 73.79 3cfbB 213 74.23 1dpeA 507 74.65 c.94.1.1 35799 1id1A 153 74.69 c.2.1.9 62286 2uv0E 175 74.90 1np3A 338 75.01 a.100.1.2,c.2.1.6 85946,85947 1ppjA 446 75.91 d.185.1.1,d.185.1.1 104252,104253 3l2eA 374 76.13 2p10A 286 76.60 c.1.12.9 149144 1wpgA 994 76.71 b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1 114806,114807,114808,114809 1mvwC 147 79.22 i.15.1.1 79525 3iszA 377 83.61 2nutA 769 83.80 3g1wA 305 84.14 2govA 195 84.61 d.60.1.4 135447 2astB 336 84.80 a.158.1.1,c.10.1.3 127273,127274 2pulA 397 85.58 d.144.1.6 149865 2aznA 219 85.93 c.71.1.2 127608 2gduA 504 85.99 b.71.1.1,c.1.8.1 135032,135033 1vk2A 204 86.35 c.18.1.2 100845 2xdtA 897 87.65 1o70A 324 87.67 b.118.1.1,b.118.1.1 81115,81116