# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hwjA	205	4.553	d.268.1.3	147421
1zzwA	149	7.250		
1wrmA	165	15.36		
2v1tA	73	19.46		
1wt4A	73	22.48		
1woyA	500	22.70	a.27.1.1,c.26.1.1	121130,121131
3fg3A	696	23.64		
3cwwA	990	23.81		
3fg1A	696	23.87		
3e4zA	990	24.60		
1yjsA	419	25.22	c.67.1.4	123461
1jndA	420	27.09	c.1.8.5,d.26.3.1	71757,71758
1yz4A	160	28.23		
3ix3A	173	29.15		
1wthD	391	31.91	b.106.1.1,b.106.1.1	121268,121269
1zckA	154	33.94		
2imgA	151	35.98		
2w91A	653	36.23		
2g47A	990	36.47		
3e4aA	1019	38.00		
3cx5A	431	40.81	d.185.1.1,d.185.1.1	157076,157077
2wbyA	990	41.88		
2avxA	171	43.38		
1e6pA	499	43.62	b.72.2.1,c.1.8.5,d.26.3.1	59314,59315,59316
1cs3A	116	44.52	d.42.1.1	38632
1ywfA	296	45.71	c.45.1.5	124144
2uv0E	175	48.66		
2ok8A	316	49.93		
1vytE	25	51.49	j.68.1.1	108912
3gw4A	203	53.52		
2eg2A	112	53.91		
2z6oA	172	59.94		
1qnrA	344	62.61	c.1.8.3	28834
1om2A	95	64.13	a.23.4.1	16520
2qsaA	109	67.48		
1rzmA	338	67.92	c.1.10.4	105137
2jtvA	65	68.20		
3bzqA	114	69.58		
3ibxA	221	69.87		
1ohcA	348	71.61	c.45.1.1,c.45.1.1	87009,87010
1gnkA	112	73.65	d.58.5.1	39073
2czcA	334	75.83	d.81.1.1,c.2.1.3	131044,145052
1pfvA	551	78.93	a.27.1.1,c.26.1.1,g.41.1.1	94660,94661,94662
2gw8A	114	80.05		
1f4lA	551	85.06	a.27.1.1,c.26.1.1,g.41.1.1	59648,59649,59650
1ppjA	446	86.35	d.185.1.1,d.185.1.1	104252,104253
2o66A	135	86.51		
2vh3A	113	86.97		
1khoA	370	88.49	a.124.1.1,b.12.1.3	72489,72490