# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hwjA	205	1.978	d.268.1.3	147421
1zzwA	149	13.88		
3ix3A	173	16.45		
1wrmA	165	17.46		
2w91A	653	18.54		
1yz4A	160	18.63		
1woyA	500	19.94	a.27.1.1,c.26.1.1	121130,121131
1wthD	391	20.99	b.106.1.1,b.106.1.1	121268,121269
2avxA	171	21.06		
2v1tA	73	25.42		
1wt4A	73	29.63		
3fg1A	696	32.63		
3cx5A	431	33.68	d.185.1.1,d.185.1.1	157076,157077
1e6pA	499	34.02	b.72.2.1,c.1.8.5,d.26.3.1	59314,59315,59316
1goiA	499	35.45	b.72.2.1,c.1.8.5,d.26.3.1	65413,65414,65415
3fg3A	696	37.50		
1zckA	154	39.51		
3cwwA	990	39.70		
1zclA	180	40.43		
1q15A	503	43.32	c.26.2.1,d.153.1.1	95538,95539
1jndA	420	46.86	c.1.8.5,d.26.3.1	71757,71758
2bnjA	303	47.70	c.1.8.3	128832
1xu2R	47	53.40	g.24.1.2	116042
3gw4A	203	53.49		
2uv0E	175	53.56		
3gbvA	304	55.53		
2imgA	151	57.67		
1vytE	25	59.95	j.68.1.1	108912
2g47A	990	61.53		
1yjsA	419	63.20	c.67.1.4	123461
3e4zA	990	64.65		
2z6oA	172	64.76		
2eg2A	112	64.85		
2kqzA	155	65.60		
1jfxA	217	68.58	c.1.8.8	62943
1cs3A	116	69.22	d.42.1.1	38632
2jtvA	65	71.22		
3e4aA	1019	71.82		
2wbyA	990	72.54		
3i1mM	118	73.80		
2gtqA	867	80.71		
1om2A	95	82.47	a.23.4.1	16520
3bzqA	114	82.83		
1wosA	364	83.47	b.44.2.1,d.250.1.1	109468,109469
2czcA	334	84.92	d.81.1.1,c.2.1.3	131044,145052
2dvyA	226	85.64		
1azsC	388	86.90	a.66.1.1,c.37.1.8	18203,32086
2nlrA	234	87.44	b.29.1.11	24344