# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hwjA	205	3.491	d.268.1.3	147421
1woyA	500	13.77	a.27.1.1,c.26.1.1	121130,121131
2w91A	653	14.32		
1e6pA	499	16.11	b.72.2.1,c.1.8.5,d.26.3.1	59314,59315,59316
1zzwA	149	23.06		
3c8dA	403	23.66	b.1.18.20,c.69.1.2	156025,156026
3ix3A	173	24.79		
1goiA	499	24.94	b.72.2.1,c.1.8.5,d.26.3.1	65413,65414,65415
3gw4A	203	25.32		
1wrmA	165	29.90		
3fg1A	696	30.14		
1yz4A	160	30.23		
3cx5A	431	31.30	d.185.1.1,d.185.1.1	157076,157077
2v1tA	73	32.69		
1jndA	420	33.33	c.1.8.5,d.26.3.1	71757,71758
1wt4A	73	33.92		
1rtwA	220	35.10	a.132.1.3	97823
3cwwA	990	35.60		
1yjsA	419	36.26	c.67.1.4	123461
1zckA	154	37.06		
2avxA	171	37.08		
3fg3A	696	37.13		
2eg2A	112	45.16		
1zclA	180	48.04		
1wthD	391	51.73	b.106.1.1,b.106.1.1	121268,121269
2kqzA	155	52.85		
2z6oA	172	52.99		
1q15A	503	53.75	c.26.2.1,d.153.1.1	95538,95539
2czcA	334	53.96	d.81.1.1,c.2.1.3	131044,145052
2g47A	990	54.55		
3e4zA	990	54.82		
1vytE	25	55.99	j.68.1.1	108912
1pfvA	551	56.98	a.27.1.1,c.26.1.1,g.41.1.1	94660,94661,94662
3bzqA	114	57.30		
1xu2R	47	58.58	g.24.1.2	116042
2a2mA	258	62.75	a.132.1.3	126039
2bnjA	303	64.06	c.1.8.3	128832
1gnkA	112	64.16	d.58.5.1	39073
3giwA	277	69.32		
2o66A	135	70.90		
1sfuA	75	72.17	a.4.5.19	105503
1x6mA	196	73.69	b.88.1.4	114920
2gw8A	114	76.86		
2wbyA	990	76.88		
1cs3A	116	76.96	d.42.1.1	38632
3e4aA	1019	78.45		
1nrkA	328	78.60	b.44.2.1,d.250.1.1	92089,92090
2uv0E	175	78.84		
1kb9A	431	83.61	d.185.1.1,d.185.1.1	77311,77312
3gbvA	304	89.87