# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hwjA	205	5.415	d.268.1.3	147421
1woyA	500	12.88	a.27.1.1,c.26.1.1	121130,121131
1zzwA	149	16.09		
1e6pA	499	18.80	b.72.2.1,c.1.8.5,d.26.3.1	59314,59315,59316
2w91A	653	20.77		
1wrmA	165	23.01		
3fg1A	696	25.71		
3cwwA	990	25.90		
3c8dA	403	27.32	b.1.18.20,c.69.1.2	156025,156026
1goiA	499	28.20	b.72.2.1,c.1.8.5,d.26.3.1	65413,65414,65415
2v1tA	73	29.59		
3gbvA	304	29.73		
1zckA	154	29.94		
1zclA	180	31.10		
1yjsA	419	32.93	c.67.1.4	123461
3e4zA	990	34.47		
1wt4A	73	35.23		
3gw4A	203	35.49		
1yz4A	160	35.56		
3fg3A	696	36.57		
2g47A	990	40.25		
2bnjA	303	40.69	c.1.8.3	128832
3ix3A	173	42.49		
2eg2A	112	46.41		
3cx5A	431	46.94	d.185.1.1,d.185.1.1	157076,157077
2z6oA	172	50.70		
1jndA	420	52.54	c.1.8.5,d.26.3.1	71757,71758
3i1mM	118	53.07		
1cs3A	116	53.64	d.42.1.1	38632
3e4aA	1019	54.22		
2wbyA	990	55.93		
1vytE	25	56.12	j.68.1.1	108912
3bzqA	114	56.21		
1rtwA	220	60.10	a.132.1.3	97823
2imgA	151	63.53		
1gnkA	112	64.62	d.58.5.1	39073
1qnrA	344	67.92	c.1.8.3	28834
2gw8A	114	68.85		
1m40A	263	74.02	e.3.1.1	74437
1sfuA	75	74.06	a.4.5.19	105503
2w00A	1038	74.28		
1q15A	503	76.96	c.26.2.1,d.153.1.1	95538,95539
1ohcA	348	78.03	c.45.1.1,c.45.1.1	87009,87010
2avxA	171	78.56		
1gc5A	467	79.68	c.72.1.3	60429
2kqzA	155	79.69		
2o66A	135	80.81		
2qsaA	109	81.21		
2acmA	66	81.75		
2a2mA	258	84.30	a.132.1.3	126039
2pii	112	85.54		
1wthD	391	88.57	b.106.1.1,b.106.1.1	121268,121269