# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jndA	420	11.90	c.1.8.5,d.26.3.1	71757,71758
1zzwA	149	13.06		
1yz4A	160	13.97		
1woyA	500	18.23	a.27.1.1,c.26.1.1	121130,121131
1zckA	154	20.86		
1qnrA	344	22.12	c.1.8.3	28834
1pfvA	551	23.86	a.27.1.1,c.26.1.1,g.41.1.1	94660,94661,94662
2v1tA	73	27.66		
2jtvA	65	27.85		
1xu2R	47	29.10	g.24.1.2	116042
1zclA	180	30.57		
1wrmA	165	31.29		
1rtwA	220	33.64	a.132.1.3	97823
1kteA	105	35.10	c.47.1.1	32771
1wt4A	73	35.58		
2eg2A	112	36.13		
3i1mM	118	36.90		
2hwjA	205	38.03	d.268.1.3	147421
1sfuA	75	39.00	a.4.5.19	105503
1azsC	388	41.18	a.66.1.1,c.37.1.8	18203,32086
3fg3A	696	41.91		
3ibxA	221	41.99		
2ok8A	316	49.10		
1q1fA	151	49.35	a.1.1.2	104476
2qsaA	109	50.89		
2govA	195	52.70	d.60.1.4	135447
1zcbA	362	53.07	a.66.1.1,c.37.1.8	124901,124902
2imgA	151	53.70		
1e6pA	499	54.25	b.72.2.1,c.1.8.5,d.26.3.1	59314,59315,59316
3fg1A	696	57.86		
1tvkA	440	59.07	c.32.1.1,d.79.2.1	107362,107363
2rfrA	155	59.77	d.17.4.28	152000
2f2gA	221	63.97	a.132.1.3	132816
3bzqA	114	64.17		
3cz8A	319	67.17		
2nx2A	181	67.17	c.129.1.2	148498
2gw8A	114	67.45		
1gxsB	158	69.90		
1goiA	499	70.11	b.72.2.1,c.1.8.5,d.26.3.1	65413,65414,65415
2oo2A	86	71.56	a.8.11.1	148917
1sz7A	200	72.70		
2o66A	135	74.24		
1gnkA	112	74.51	d.58.5.1	39073
3gbvA	304	77.30		
1itg	166	79.81		
1bl3A	160	83.23	c.55.3.2	33655
3mebA	448	85.68		
3bs3A	76	86.87		
1whsB	153	87.97		
1rxdA	159	89.64	c.45.1.1	111959