# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1liqA 28 9.539e-01 k.34.1.1 73925 3jzyA 125 1.676e+00 3db0A 117 2.582e+00 3fesA 143 2.607e+00 1hulA 109 2.677e+00 1hulA a.26.1.2 16865 3kwuA 136 4.026e+00 1c1kA 218 4.362e+00 1c1kA a.120.1.1 19239 1vytE 26 5.030e+00 j.68.1.1 108912 2yrnA 130 5.044e+00 2bwqA 123 6.231e+00 b.7.1.2 129380 2z72A 339 6.772e+00 1ponB 35 7.272e+00 1ponB 1gmiA 136 7.547e+00 b.7.1.1 65309 3k6cA 92 7.694e+00 3duiA 133 8.638e+00 3ec6A 130 8.776e+00 2hq7A 142 8.918e+00 b.45.1.1 136657 3f4mA 155 9.261e+00 2v6eA 532 1.019e+01 2vavA 349 1.047e+01 c.69.1.40 152844 2bbaA 186 1.079e+01 b.18.1.4 146133 2h26A 284 1.080e+01 b.1.1.2 135990 d.19.1.1 135991 1jy1A 440 1.087e+01 d.136.1.3 67438 d.136.1.3 67439 1bdyA 124 1.124e+01 1bdyA b.7.1.1 23190 1f8vA 356 1.138e+01 2bbvA b.121.4.4 23329 1sraA 152 1.198e+01 a.39.1.3 17190 2gl7C 24 1.283e+01 2fhqA 136 1.311e+01 b.45.1.1 133497 3dmbA 147 1.314e+01 3h9pA 227 1.341e+01 2re7A 133 1.408e+01 2vatA 348 1.529e+01 c.69.1.40 152831 1nn5A 205 1.542e+01 c.37.1.1 85892 1kgyA 182 1.797e+01 b.18.1.4 72449 3ck2A 175 1.811e+01 d.159.1.7 156724 1hl2A 296 1.896e+01 c.1.10.1 83581 1rlw 127 1.968e+01 1rlw 2vuwA 330 2.108e+01 1z2wA 183 2.113e+01 d.159.1.7 124390 3f04A 137 2.119e+01 3hvnA 467 2.120e+01 2aumA 295 2.255e+01 c.8.10.1 127330 c.23.16.7 127331 1k5wA 149 2.292e+01 b.7.1.2 68212 1ro7A 259 2.331e+01 c.130.1.1 97667 2wkjA 299 2.338e+01 2dvyA 224 2.429e+01 2chdA 129 2.435e+01 2qeaA 161 2.478e+01 2nsqA 141 2.515e+01 2i02A 141 2.525e+01 b.45.1.1 136936 1xwjB 25 2.585e+01 1fehA 575 2.589e+01 1fehA c.96.1.1 36015 d.15.4.2 37690 d.58.1.5 38998 2aunA 295 2.610e+01 c.8.10.1 127334 c.23.16.7 127335 1rfeA 161 2.623e+01 b.45.1.1 111796 3e96A 297 2.644e+01 2vpaA 205 2.676e+01 b.45.1.1 153421 1crxA 323 2.703e+01 4crxA a.60.9.1 18097 d.163.1.1 42157 2g0bA 189 2.708e+01 1q32A 420 2.762e+01 d.136.1.3 104507 d.136.1.3 104508 1a7iA 61 2.764e+01 g.39.1.3 45143 g.39.1.3 45144 1igs 248 2.791e+01 1a53 5reqA 726 2.811e+01 1reqA c.1.19.1 29632 c.23.6.1 31259 3fh2A 147 2.889e+01 3kxyA 134 2.925e+01 1a25A 133 2.962e+01 1rsy b.7.1.2 23197 1c1lA 136 2.976e+01 1c1lA b.29.1.3 24219 3e7aA 294 2.983e+01 2fk4A 68 3.058e+01 g.90.1.1 147040 1nhyA 220 3.067e+01 a.45.1.1 80520 c.47.1.5 80521 3fbkA 139 3.102e+01 1wspA 84 3.131e+01 d.15.1.8 145834 2auwA 152 3.140e+01 a.35.1.10 127339 d.331.1.1 127340 2pq7A 175 3.208e+01 a.211.1.1 149786 3b7yA 145 3.210e+01 1fdyA 293 3.267e+01 1nal3 c.1.10.1 29071 2tysA 256 3.267e+01 2tysA c.1.2.4 28572 1ifa 159 3.294e+01 1ifa 1o82A 71 3.347e+01 a.64.2.1 92630 1w15A 133 3.357e+01 b.7.1.2 109041 2hmcA 315 3.459e+01 1zrsA 295 3.470e+01 c.8.10.1 125556 c.23.16.7 125557 3crxA 324 3.622e+01 4crxA a.60.9.1 18101 d.163.1.1 42161 1qopA 266 3.655e+01 2tysA c.1.2.4 28570 2pqnB 21 3.704e+01 1pyaA 82 3.730e+01 1pyaA d.155.1.1 42026 1nukA 170 3.791e+01 1nukA b.18.1.4 23721 1t0iA 186 3.990e+01 c.23.5.4 106209