# List of top-scoring protein chains for t2k.100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ca1 370 1.93e+00 1ca1 1ca1A 370 1.93e+00 a.124.1.1 19340 b.12.1.3 23648 1vhuA 211 2.17e+00 c.50.1.2 100703 2g3vA 208 3.08e+00 2w61A 555 3.49e+00 2w62A 556 3.67e+00 3mliA 100 4.11e+00 1nfvA 179 4.19e+00 a.25.1.1 85642 3mb3A 135 4.36e+00 3grlA 651 4.44e+00 2pbkA 228 5.20e+00 b.57.1.1 149365 3fkmX 166 5.68e+00 3ihuA 222 6.01e+00 2wxuA 370 6.11e+00 3istA 269 6.39e+00 2oufA 94 6.62e+00 a.292.1.1 149021 2fshA 853 7.35e+00 2w3cA 577 7.55e+00 3kikA 96 8.18e+00 3e64A 293 8.27e+00 1zl8A 53 9.11e+00 a.194.1.1 125238 2ddxA 333 9.40e+00 1itkA 731 9.84e+00 a.93.1.3 71417 a.93.1.3 71418 2d51A 406 9.94e+00 1jliA 112 9.98e+00 a.26.1.2 16884 1zroA 602 1.07e+01 a.264.1.1 125551 a.264.1.1 125552 1m0wA 491 1.07e+01 c.30.1.4 78363 d.142.1.6 78364 1mgtA 174 1.11e+01 1mgtA a.4.2.1 16078 c.55.7.1 33753 1wt4A 73 1.13e+01 2v1tA 73 1.13e+01 2vh3A 113 1.15e+01 2fi1A 190 1.17e+01 c.108.1.3 133508 1fl1A 230 1.21e+01 1at3A b.57.1.1 27023 3cg4A 142 1.22e+01 3lxlA 327 1.24e+01 3h6i1 248 1.26e+01 3mhsB 96 1.29e+01 3mlgA 189 1.29e+01 2k19A 98 1.30e+01 1om2A 95 1.30e+01 1om2A a.23.4.1 16520 3mi01 248 1.33e+01 3fwbC 96 1.44e+01 1vbkA 307 1.45e+01 c.26.2.6 119957 d.308.1.1 119958 2gzmA 267 1.46e+01 1gwcA 230 1.50e+01 a.45.1.1 70660 c.47.1.5 70661 2c0gA 248 1.51e+01 a.71.1.1 129590 c.47.1.7 129591 2b7aA 293 1.59e+01 2qfnA 138 1.61e+01 1fs1B 141 1.70e+01 1vcbB a.157.1.1 19252 d.42.1.1 38664 1ovnA 248 1.70e+01 a.71.1.1 93602 c.47.1.7 93603 1h4rA 314 1.76e+01 a.11.2.1 65616 b.55.1.5 65617 d.15.1.4 65618 1mioA 534 1.79e+01 1qguA c.92.2.3 35601 1lb2B 84 1.81e+01 a.60.3.1 77871 2okxA 956 1.86e+01 1o5zA 442 1.89e+01 c.59.1.2 92530 c.72.2.2 92531 2qjcA 262 1.89e+01 1ewaA 137 1.89e+01 1ewaA a.1.1.2 15639 3kunA 137 1.90e+01 3dcpA 283 1.93e+01 1wthD 391 1.98e+01 b.106.1.1 121268 b.106.1.1 121269 3ixfA 137 2.03e+01 1nw1A 429 2.05e+01 d.144.1.8 86286 1u6zA 513 2.06e+01 a.211.1.5 119608 c.55.1.8 119609 c.55.1.8 119610 3h0lA 478 2.11e+01 3ib6A 189 2.15e+01 2imgA 151 2.15e+01 3khkA 544 2.16e+01 1q1vA 70 2.18e+01 a.159.4.1 104479 3dr9A 137 2.23e+01 1ew6A 137 2.25e+01 1ewaA a.1.1.2 15637 2xat 212 2.26e+01 2xat 2xatA 212 2.26e+01 b.81.1.3 28058 3gxhA 157 2.28e+01 1jgcA 161 2.39e+01 a.25.1.1 66673 1i1rB 181 2.44e+01 1i1rB a.26.1.1 61548 1px5A 349 2.45e+01 a.160.1.2 95277 d.218.1.6 95278 3hcwA 295 2.46e+01 3e0hA 158 2.54e+01 2kk0A 145 2.60e+01 3i53A 332 2.61e+01 1gqiA 708 2.67e+01 c.1.8.10 76279 d.92.2.2 76280 2iakA 224 2.69e+01 1o5iA 249 2.76e+01 c.2.1.2 92499 1vr5A 547 2.77e+01 c.94.1.1 120437 1vytE 25 2.78e+01 j.68.1.1 108912 1w9yA 319 2.82e+01 b.82.2.1 120801 3fi9A 343 2.83e+01 3lljA 126 2.89e+01 3b77A 193 2.97e+01 b.55.1.13 154921 3n4fA 392 3.02e+01 1bccD 241 3.13e+01 1be3D a.3.1.3 15959 f.23.11.1 43698 2whnA 116 3.17e+01 2fsxA 148 3.21e+01 1ef1A 294 3.25e+01 1ef1A a.11.2.1 16368 b.55.1.5 27003 d.15.1.4 37611 2rdzA 452 3.29e+01 a.138.1.3 151967 3genA 283 3.31e+01 3fobA 281 3.33e+01 3eoqA 406 3.36e+01 1sxjB 323 3.38e+01 a.80.1.1 106083 c.37.1.20 106084 2b3yA 888 3.38e+01 c.8.2.1 127803 c.83.1.1 127804 1k04A 162 3.39e+01 a.24.14.1 67904 5tmpA 213 3.40e+01 5tmpA c.37.1.1 31931 3dv9A 247 3.42e+01 1wn1A 356 3.45e+01 1zlmA 58 3.48e+01 2irfG 113 3.49e+01 2irfG a.4.5.23 16185 2awiA 317 3.67e+01 a.35.1.11 127435 a.118.8.4 127436 2bx2L 517 3.68e+01 4tmkA 213 3.72e+01 5tmpA c.37.1.1 31930 1ovaA 386 3.77e+01 1ovaA e.1.1.1 42619 1ppjD 241 3.83e+01 a.3.1.3 104258 f.23.11.1 104259 1uhgA 385 3.85e+01 e.1.1.1 88491 3l4qC 170 3.88e+01 1wchA 315 3.89e+01 c.45.1.2 114508 1mwvA 714 3.92e+01 a.93.1.3 85161 a.93.1.3 85162 3n3rA 748 3.94e+01