# List of top-scoring protein chains for t2k.100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3mb3A 135 1.49e+00 2pbkA 228 1.73e+00 b.57.1.1 149365 2w3cA 577 2.08e+00 3grlA 651 2.29e+00 1mgtA 174 2.49e+00 1mgtA a.4.2.1 16078 c.55.7.1 33753 1fl1A 230 2.66e+00 1at3A b.57.1.1 27023 1om2A 95 2.75e+00 1om2A a.23.4.1 16520 1ca1 370 2.92e+00 1ca1 1ca1A 370 2.92e+00 a.124.1.1 19340 b.12.1.3 23648 3mliA 100 3.50e+00 2w61A 555 3.57e+00 1vhuA 211 3.58e+00 c.50.1.2 100703 2w62A 556 3.59e+00 1zroA 602 3.71e+00 a.264.1.1 125551 a.264.1.1 125552 1fs1B 141 3.85e+00 1vcbB a.157.1.1 19252 d.42.1.1 38664 2oufA 94 4.37e+00 a.292.1.1 149021 1wt4A 73 4.50e+00 2eayA 233 4.53e+00 3fkmX 166 4.61e+00 3cg4A 142 4.64e+00 3mhsB 96 4.88e+00 2wxuA 370 4.93e+00 2v1tA 73 5.02e+00 3lxlA 327 5.22e+00 1lb2B 84 5.41e+00 a.60.3.1 77871 3ib6A 189 5.45e+00 1zl8A 53 5.55e+00 a.194.1.1 125238 3ihuA 222 5.69e+00 3fwbC 96 5.71e+00 3e64A 293 6.12e+00 2g3vA 208 6.35e+00 2ddxA 333 6.73e+00 4tmkA 213 6.77e+00 5tmpA c.37.1.1 31930 1nfvA 179 7.18e+00 a.25.1.1 85642 2qjcA 262 7.32e+00 3kikA 96 7.39e+00 2vh3A 113 7.91e+00 5tmpA 213 8.29e+00 5tmpA c.37.1.1 31931 2p06A 114 8.39e+00 a.204.1.3 139452 1jgcA 161 8.97e+00 a.25.1.1 66673 1px5A 349 9.02e+00 a.160.1.2 95277 d.218.1.6 95278 1gtmA 419 9.30e+00 1hwyA c.2.1.7 30223 c.58.1.1 33871 1jliA 112 9.90e+00 a.26.1.2 16884 2whnA 116 1.00e+01 2k19A 98 1.03e+01 2b7aA 293 1.03e+01 3istA 269 1.04e+01 1vbkA 307 1.07e+01 c.26.2.6 119957 d.308.1.1 119958 2zvcA 295 1.23e+01 3h6i1 248 1.23e+01 3mlgA 189 1.30e+01 3mi01 248 1.30e+01 2bkaA 242 1.31e+01 c.2.1.2 128666 2vvnA 737 1.37e+01 a.246.1.1 153634 c.1.8.10 153635 d.92.2.3 153636 2qfnA 138 1.38e+01 2f6hX 419 1.39e+01 3ixfA 137 1.42e+01 1khoA 370 1.46e+01 a.124.1.1 72489 b.12.1.3 72490 1wthD 391 1.52e+01 b.106.1.1 121268 b.106.1.1 121269 1ef1A 294 1.54e+01 1ef1A a.11.2.1 16368 b.55.1.5 27003 d.15.1.4 37611 2c0gA 248 1.57e+01 a.71.1.1 129590 c.47.1.7 129591 3kunA 137 1.61e+01 2eg2A 112 1.65e+01 1itkA 731 1.72e+01 a.93.1.3 71417 a.93.1.3 71418 1uaaA 673 1.73e+01 1pjr c.37.1.19 32401 c.37.1.19 32402 2okxA 956 1.75e+01 3mhxA 85 1.77e+01 2rkkA 168 1.82e+01 1h4rA 314 1.83e+01 a.11.2.1 65616 b.55.1.5 65617 d.15.1.4 65618 1ew6A 137 1.84e+01 1ewaA a.1.1.2 15637 1ewaA 137 1.84e+01 1ewaA a.1.1.2 15639 2rdzA 452 1.85e+01 a.138.1.3 151967 1ovnA 248 1.86e+01 a.71.1.1 93602 c.47.1.7 93603 3i53A 332 1.90e+01 2k5fA 105 1.98e+01 3e4fA 265 2.05e+01 3dr9A 137 2.06e+01 3ijwA 268 2.09e+01 1k04A 162 2.09e+01 a.24.14.1 67904 1x9fB 145 2.12e+01 a.1.1.2 114984 1b9gA 57 2.18e+01 2gf1 g.1.1.1 43991 1vytE 25 2.19e+01 j.68.1.1 108912 2rpaA 78 2.22e+01 3ll9A 269 2.24e+01 2iu5A 195 2.26e+01 a.4.1.9 147801 a.121.1.1 147802 3dcpA 283 2.37e+01 2pii 112 2.38e+01 2pii 1o5zA 442 2.38e+01 c.59.1.2 92530 c.72.2.2 92531 2vl0A 321 2.44e+01 1tjlA 151 2.45e+01 a.2.14.1 107027 g.39.1.13 107028 3e0hA 158 2.49e+01 3a8jA 364 2.57e+01 3b77A 193 2.57e+01 b.55.1.13 154921 3a8kA 364 2.57e+01 1vloA 381 2.61e+01 b.44.2.1 108838 d.250.1.1 108839 1bccD 241 2.61e+01 1be3D a.3.1.3 15959 f.23.11.1 43698 1ci9A 392 2.63e+01 e.3.1.1 64767 1hl9A 449 2.65e+01 b.71.1.3 90650 c.1.8.11 90651 2nxpA 156 2.67e+01 d.379.1.1 148504 1or4A 178 2.67e+01 a.1.1.2 93447 2wnfA 298 2.68e+01 3gxhA 157 2.69e+01 3mydA 365 2.70e+01 3eoqA 406 2.72e+01 3genA 283 2.73e+01 2qulA 290 2.73e+01 1wn1A 356 2.74e+01 1qo7A 394 2.76e+01 1qo7A c.69.1.11 34697 1gutA 68 2.77e+01 b.40.6.1 65576 1zgyA 272 2.88e+01 a.123.1.1 125064 3fseA 365 2.89e+01 1euzA 419 2.94e+01 1k89 c.2.1.7 59513 c.58.1.1 59514 1w9yA 319 2.95e+01 b.82.2.1 120801 1c3cA 429 2.98e+01 1c3cA a.127.1.1 19425 2dbnA 461 2.99e+01 3khkA 544 3.02e+01 2d51A 406 3.02e+01 1o5iA 249 3.05e+01 c.2.1.2 92499 1nw1A 429 3.06e+01 d.144.1.8 86286 2b8eA 273 3.06e+01 c.108.1.7 128068 d.220.1.1 128069 1h97A 147 3.10e+01 1h97A a.1.1.2 60812 3g26A 77 3.10e+01 3hcwA 295 3.18e+01 3l2oA 149 3.19e+01 2xauA 773 3.20e+01 3me7A 170 3.23e+01 1vr5A 547 3.23e+01 c.94.1.1 120437 1wy1A 172 3.23e+01 2zxdA 455 3.27e+01 3c0qA 301 3.28e+01 3a1eA 287 3.28e+01 2e52A 300 3.29e+01 2irfG 113 3.30e+01 2irfG a.4.5.23 16185 2wzhA 737 3.34e+01 1r9dA 787 3.35e+01 c.7.1.1 104865 1uedA 406 3.35e+01 a.104.1.1 99256 2fi1A 190 3.35e+01 c.108.1.3 133508 3a1dA 287 3.36e+01 3bs4A 260 3.37e+01 2xat 212 3.39e+01 2xat 2xatA 212 3.39e+01 b.81.1.3 28058 1gnkA 112 3.44e+01 2pii d.58.5.1 39073 1abvA 134 3.46e+01 a.70.1.1 18317 2zcaA 169 3.46e+01 2prgA 271 3.55e+01 2prgA a.123.1.1 19311 3e8tA 220 3.55e+01 1i1rB 181 3.63e+01 1i1rB a.26.1.1 61548 1gm7A 209 3.63e+01 d.153.1.2 65302 3a4kA 301 3.66e+01 2iakA 224 3.67e+01 2q0tA 263 3.69e+01 a.152.1.1 149990 2grmA 317 3.70e+01 a.35.1.11 147161 a.118.8.4 147162 1o6eA 235 3.71e+01 b.57.1.1 81083 2hzqA 174 3.72e+01 3gdcA 288 3.83e+01 3bemA 218 3.83e+01 3gruA 295 3.85e+01 1b1cA 181 3.88e+01 1amoA c.23.5.2 31212 2j6vA 301 3.89e+01 1umdA 367 3.92e+01 c.36.1.11 99599 3bmxA 642 3.93e+01 3mhyA 112 3.95e+01