# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2r8eA 174 1.677e-46 3i6bA 174 8.806e-44 3ewiA 158 3.551e-33 1k1eA 178 4.201e-31 c.108.1.5 67995 3mn1A 184 1.368e-29 3mmzA 164 1.538e-25 2p9jA 159 7.707e-25 3e8mA 165 1.224e-24 3ij5A 186 2.311e-23 1wr8A 231 5.447e-20 c.108.1.10 114836 1l7mA 210 1.272e-16 c.108.1.4 73664 1nrwA 286 1.531e-16 c.108.1.10 86128 1rkqA 272 3.292e-16 c.108.1.10 97621 1f5sA 211 3.342e-16 1f5sA c.108.1.4 59656 2b30A 285 3.920e-16 c.108.1.10 127759 3niwA 267 5.743e-16 1j97A 211 1.316e-15 1f5sA c.108.1.4 62753 1l6rA 226 2.265e-15 c.108.1.10 77768 2hf2A 267 3.729e-15 1nf2A 268 5.527e-15 c.108.1.10 91849 1rlmA 270 1.181e-14 c.108.1.10 111860 3daoA 266 5.741e-14 1rloA 269 6.256e-14 c.108.1.10 111864 3m1yA 204 1.008e-13 1ymqA 261 1.921e-13 c.108.1.10 123707 3mpoA 241 2.678e-13 3dnpA 276 5.381e-13 3fzqA 272 5.816e-13 1s2oA 245 1.384e-12 c.108.1.10 118846 3gygA 286 1.191e-11 1nnlA 206 3.672e-10 c.108.1.4 85906 2zosA 239 4.893e-10 2rbkA 262 6.698e-09 c.108.1.10 151850 3kd3A 217 8.026e-09 1y8aA 314 1.255e-08 c.108.1.24 145913 1xviA 233 1.490e-08 c.108.1.10 116088 1wzcA 235 2.365e-08 c.108.1.10 121491 1vjrA 262 3.439e-08 c.108.1.14 100832 2wm8A 171 4.360e-08 2ah5A 211 8.368e-08 c.108.1.6 126742 2iyeA 250 3.433e-07 2go7A 205 3.576e-07 c.108.1.6 135434 1rkuA 207 3.744e-07 c.108.1.11 97627 2o2xA 210 6.145e-07 c.108.1.19 148564 1u7pA 165 6.587e-07 c.108.1.17 113095 2cftA 293 7.397e-07 2hi0A 241 8.266e-07 3fvvA 224 1.695e-06 2hoqA 238 1.791e-06 2nyvA 218 2.798e-06 2oycA 293 2.918e-06 1x42A 231 3.153e-06 c.108.1.1 121677 2b0cA 200 4.118e-06 c.108.1.2 127633 1qyiA 381 4.671e-06 c.108.1.13 96595 2fueA 247 4.973e-06 c.108.1.10 134119 2hszA 226 5.234e-06 c.108.1.6 136726 1swvA 258 6.101e-06 c.108.1.3 112134 2x4dA 271 6.906e-06 3i76A 224 7.558e-06 3m9lA 202 7.784e-06 1rdfA 264 8.053e-06 c.108.1.3 104884 2voyI 129 8.231e-06 3cnhA 201 9.865e-06 2b8eA 247 1.000e-05 c.108.1.7 128068 d.220.1.1 128069 1wviA 254 1.088e-05 c.108.1.14 114915 3mc1A 217 1.133e-05 2fdrA 223 1.273e-05 c.108.1.6 133319 2hx1A 285 1.806e-05 2w4mA 251 1.839e-05 1qq5A 246 2.256e-05 1qq5A c.108.1.1 43327 2fi1A 188 2.299e-05 c.108.1.3 133508 1fezA 257 2.535e-05 1fezA c.108.1.3 43343 2c4nA 251 2.684e-05 c.108.1.14 129837 2gfhA 247 2.738e-05 c.108.1.6 135096 3kzxA 206 3.224e-05 1rqlA 258 3.925e-05 c.108.1.3 97750 1qq7A 246 4.067e-05 1qq5A c.108.1.1 43329 2om6A 234 4.185e-05 3ed5A 233 5.151e-05 3k1zA 242 5.898e-05 2i6xA 206 6.170e-05 2fprA 157 6.545e-05 c.108.1.19 133919 1u02A 230 7.191e-05 c.108.1.15 107538 2hdoA 208 7.458e-05 c.108.1.6 136345 3l5kA 234 8.263e-05 2hcfA 226 1.080e-04 c.108.1.6 136333 3dv9A 244 1.111e-04 2qltA 252 1.132e-04 1aq6A 246 1.230e-04 1qq5A c.108.1.1 43331 2pibA 217 1.473e-04 3kbbA 217 2.219e-04 3ib6A 180 2.276e-04 2w43A 202 2.415e-04 3a1dA 269 2.849e-04 2zg6A 203 2.853e-04 3l8hA 180 3.020e-04 2no4A 226 3.071e-04 3iruA 277 3.099e-04 3d6jA 211 3.272e-04 3a1eA 269 3.428e-04 2amyA 241 4.081e-04 c.108.1.10 127026 3eprA 261 5.000e-04 3hltA 257 5.479e-04 1te2A 219 6.199e-04 c.108.1.6 106792 1zrnA 221 6.468e-04 c.108.1.1 43323 2pkeA 234 8.120e-04 1o08A 222 9.544e-04 c.108.1.6 86525 2gmwA 183 9.724e-04 c.108.1.19 147137 2feaA 226 1.229e-03 c.108.1.20 133327 3ddhA 230 1.276e-03 3e58A 212 1.729e-03 2ho4A 252 2.481e-03 2wf7A 219 2.845e-03 1cr6B 542 3.334e-03 1cr6B c.108.1.2 43338 c.69.1.11 34688 1zjjA 262 3.684e-03 1zs9A 254 2.304e-02 c.108.1.22 125600 2b82A 212 2.388e-02 c.108.1.12 128057 2pr7A 138 2.535e-02 1rmwA 212 4.632e-02 2p11A 220 7.239e-02 2odaA 193 9.610e-02 3bwvA 168 1.476e-01 2g09A 292 2.956e-01 1kw3B 289 5.398e-01 d.32.1.3 77549 d.32.1.3 77550 3fh2A 147 5.964e-01 3fesA 143 7.294e-01 2i7dA 194 1.180e+00 1han 288 1.294e+00 1han 1q92A 196 1.469e+00 c.108.1.8 96250 1khyA 133 1.590e+00 a.174.1.1 77410 2ef5A 274 2.147e+00 2i33A 239 2.376e+00 2wwfA 212 2.631e+00 1hjrA 159 2.743e+00 1hjrA c.55.3.6 33727 1vk5A 122 2.884e+00 a.220.1.1 108635 2q3tA 122 2.884e+00 a.220.1.1 139808 1acmA 311 3.009e+00 3csuA c.78.1.1 35180 c.78.1.1 35181 3m1rA 319 3.157e+00 2bduA 292 3.163e+00 c.108.1.21 146135 1m4zA 204 3.178e+00 b.34.12.1 78630 2cb0A 321 3.466e+00 1lkdA 288 3.554e+00 d.32.1.3 78059 d.32.1.3 78060 3gliO 28 3.612e+00 3kc2A 328 3.991e+00 2df8A 326 4.198e+00 3iufA 33 4.689e+00 3et4A 245 5.064e+00 1o6jA 150 5.212e+00 c.47.1.10 81089 1ekxA 311 5.242e+00 3csuA c.78.1.1 35088 c.78.1.1 35089 1dgnA 90 5.260e+00 1dgnA a.77.1.3 18436 2g80A 226 5.279e+00 c.108.1.22 134741 1k6kA 143 6.577e+00 a.174.1.1 77274 2dqsA 995 6.919e+00 2e5fA 326 6.962e+00 2kl8A 86 7.386e+00 1lm8C 89 7.861e+00 d.42.1.1 74034 2wwwA 299 7.931e+00 1f0iA 497 8.190e+00 1f0iA d.136.1.2 59566 d.136.1.2 59567 1gq6A 296 8.295e+00 c.42.1.1 70341 2a0mA 299 8.689e+00 c.42.1.1 125960 2fnjC 89 8.982e+00 d.42.1.1 133820 2jc9A 468 9.137e+00 8atcA 311 9.165e+00 3csuA c.78.1.1 35132 c.78.1.1 35133 1a19A 90 9.194e+00 1ay7B c.9.1.1 30831 2vnfA 51 9.328e+00 g.50.1.2 153333 1mhsA 921 9.380e+00 i.18.1.1 79130 1ml4A 308 1.001e+01 c.78.1.1 79255 c.78.1.1 79256 3gszA 559 1.011e+01 2z00A 427 1.045e+01 3lxmA 291 1.066e+01 1vcbB 89 1.071e+01 1vcbB d.42.1.1 38633 1o82A 71 1.096e+01 a.64.2.1 92630 2fb2A 328 1.097e+01 1f1uA 323 1.143e+01 d.32.1.3 83200 d.32.1.3 83201 1ortA 336 1.153e+01 1othA c.78.1.1 35204 c.78.1.1 35205 1b3sD 91 1.181e+01 1ay7B c.9.1.1 30846 3c6wA 52 1.210e+01 1dp0A 1012 1.235e+01 b.1.4.1 22073 b.1.4.1 22074 b.18.1.5 23722 b.30.5.1 24346 c.1.8.3 28845 1sr3A 115 1.285e+01 b.40.9.1 98976 1xfkA 325 1.373e+01 c.42.1.1 115264 3bt5A 152 1.397e+01 2ehzA 300 1.456e+01 1gjsA 66 1.465e+01 1gab a.8.1.2 60578 2kftB 22 1.499e+01 1b2sD 91 1.528e+01 1ay7B c.9.1.1 30837 1kngA 145 1.592e+01 c.47.1.10 72777 2di2A 30 1.804e+01 1duvG 334 1.843e+01 1othA c.78.1.1 35228 c.78.1.1 35229 1y80A 126 1.884e+01 2d9gA 54 1.887e+01 2ciuA 124 1.923e+01 1pvvA 314 2.112e+01 c.78.1.1 95190 c.78.1.1 95191 1ay7B 90 2.129e+01 1ay7B c.9.1.1 30836 2zztA 84 2.213e+01 3d40A 253 2.214e+01 2cevA 299 2.282e+01 1d3vA c.42.1.1 32576 1i5gA 145 2.339e+01 1ewxA c.47.1.10 61784 2v94A 97 2.357e+01 d.12.1.3 152795 2bdeA 459 2.396e+01 c.108.1.23 128335 1l7vA 325 2.507e+01 f.22.1.1 73672 2d9kA 76 2.509e+01 2e2zA 101 2.509e+01 2ctoA 94 2.578e+01 2wr8A 259 2.668e+01 3d8lA 92 2.717e+01 3f43A 118 2.727e+01 2hzsI 23 2.758e+01 1b27D 91 2.792e+01 1ay7B c.9.1.1 30840 2eyqA 1147 2.818e+01 b.34.18.1 132590 c.37.1.19 132591 c.37.1.19 132592 c.37.1.19 132593 c.37.1.19 132594 d.315.1.1 132595 3dnfA 282 2.833e+01 2nq2A 309 2.865e+01 1o8xA 144 2.874e+01 c.47.1.10 86681 1wwtA 89 2.904e+01 3lwaA 168 2.922e+01 2g6qA 53 2.954e+01 3l5oA 248 2.979e+01 3efyA 184 2.989e+01 2gqjA 99 3.134e+01 2vapA 336 3.193e+01 c.32.1.1 152828 d.79.2.1 152829 3e1uA 185 3.248e+01 3bypA 83 3.272e+01 d.52.9.1 155726 3kdpA 999 3.284e+01 1w68A 282 3.296e+01 a.25.1.2 109216 1f1xA 320 3.316e+01 d.32.1.3 83208 d.32.1.3 83209 3m66A 271 3.330e+01 1i36A 259 3.409e+01 a.100.1.8 71108 c.2.1.6 71109 1paqA 162 3.460e+01 a.118.1.14 94413 3ia1A 144 3.470e+01 1jk0A 335 3.496e+01 a.25.1.2 63142 2a5hA 410 3.510e+01 3cgxA 232 3.577e+01 1zd3A 548 3.656e+01 c.108.1.2 124930 c.69.1.11 124931 3e10A 167 3.663e+01 2nrrA 140 3.718e+01 2fdiA 200 3.759e+01 b.82.2.10 133311 2j5yA 62 3.946e+01 a.8.1.2 147887