PFRMAT SS
TARGET T0635
AUTHOR SAM-T02-server 
METHOD This file is the result of combining several RDB files, specifically
METHOD T0635.t2k.dssp-ebghstl.rdb  (weight 1.53986)
METHOD T0635.t2k.stride-ebghtl.rdb  (weight 1.24869)
METHOD T0635.t2k.str.rdb  (weight 1.53983)
METHOD These files were combined by translating their predictions into EHL
METHOD predictions with tables generated by compare-real, and then combining
METHOD those predictions with weights proportional to their mutual information
METHOD with the EHL alphabet.  The comments from the individual files follow.
METHOD
METHOD Comments from T0635.t2k.dssp-ebghstl.rdb
METHOD ============================================
METHOD TARGET T0635
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0635.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 1143
METHOD
METHOD ============================================
METHOD Comments from T0635.t2k.stride-ebghtl.rdb
METHOD ============================================
METHOD TARGET T0635
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0635.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 1143
METHOD
METHOD ============================================
METHOD Comments from T0635.t2k.str.rdb
METHOD ============================================
METHOD TARGET T0635
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-str-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   13 (1 str )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0635.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 1143
METHOD
METHOD ============================================
MODEL 1
M C 0.96
S C 0.81
L C 0.61
N C 0.48
T E 0.50
E E 0.52
I C 0.48
E C 0.60
M C 0.63
N H 0.73
E H 0.81
L H 0.89
L H 0.90
E H 0.86
K H 0.86
A H 0.85
K H 0.73
K H 0.50
I C 0.59
K C 0.47
C E 0.72
L E 0.85
I E 0.90
C E 0.86
D E 0.59
V C 0.61
D C 0.76
G C 0.63
V E 0.68
L E 0.74
S C 0.49
D C 0.78
G C 0.76
L C 0.50
L E 0.86
H E 0.91
I E 0.88
D C 0.57
N C 0.90
H C 0.93
G C 0.85
N C 0.63
E E 0.63
L E 0.54
K C 0.46
S C 0.50
F C 0.52
H C 0.60
V C 0.48
Q C 0.47
D H 0.52
G H 0.53
M H 0.50
G H 0.52
L H 0.60
K H 0.63
L H 0.71
L H 0.78
M H 0.79
A H 0.74
A C 0.53
G C 0.92
I C 0.74
Q E 0.68
V E 0.88
A E 0.90
I E 0.91
I E 0.80
T C 0.48
T C 0.67
A C 0.69
Q C 0.64
N C 0.65
A H 0.49
V H 0.59
V H 0.60
D H 0.56
H H 0.55
R H 0.61
M H 0.52
E H 0.46
Q C 0.62
L C 0.79
G C 0.73
I E 0.58
T E 0.77
H E 0.85
Y E 0.79
Y E 0.62
K C 0.66
G C 0.83
Q C 0.78
V C 0.73
D C 0.80
K H 0.60
R H 0.90
S H 0.95
A H 0.97
Y H 0.98
Q H 0.98
H H 0.98
L H 0.98
K H 0.98
K H 0.97
T H 0.94
L H 0.51
G C 0.98
L C 0.98
N C 0.96
D H 0.74
D H 0.75
E H 0.73
F E 0.56
A E 0.72
Y E 0.78
I E 0.52
G C 0.73
D C 0.86
D C 0.83
L C 0.56
P C 0.57
D H 0.52
L H 0.88
P H 0.92
L H 0.95
I H 0.96
Q H 0.95
Q H 0.88
V H 0.67
G C 0.85
L C 0.80
G C 0.68
V E 0.48
A E 0.48
V C 0.52
S C 0.55
N C 0.61
A C 0.59
V C 0.50
P H 0.94
Q H 0.95
V H 0.96
L H 0.95
E H 0.92
F H 0.80
A C 0.50
D C 0.60
W E 0.55
R E 0.68
T E 0.72
E C 0.49
R C 0.85
T C 0.90
G C 0.93
G C 0.80
R C 0.56
G H 0.61
A H 0.88
V H 0.96
R H 0.97
E H 0.98
L H 0.98
C H 0.98
D H 0.98
L H 0.98
I H 0.98
L H 0.97
N H 0.93
A H 0.88
Q H 0.65
N C 0.56
K H 0.59
A H 0.92
E H 0.95
L H 0.95
A H 0.95
I H 0.96
T H 0.94
G H 0.91
Y H 0.87
L H 0.74
K H 0.60
Q C 0.51
E C 0.69
G C 0.82
H C 0.75
H C 0.67
H C 0.66
H C 0.76
H C 0.86
H C 0.98
END