# List of top-scoring protein chains for t2k.100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3mn1A 189 2.45e-35 3i6bA 180 1.37e-34 3ij5A 211 3.15e-34 2r8eA 188 3.34e-34 2p9jA 162 3.58e-32 1k1eA 180 4.55e-31 c.108.1.5 67995 3e8mA 164 1.97e-28 3mmzA 176 1.79e-27 1rkqA 282 1.89e-25 c.108.1.10 97621 3ewiA 168 9.42e-25 3niwA 279 3.82e-24 3dnpA 290 1.31e-21 1nrwA 288 2.06e-20 c.108.1.10 86128 1nf2A 268 4.93e-20 c.108.1.10 91849 3mpoA 279 2.31e-19 2hf2A 283 1.38e-18 1rlmA 271 5.62e-18 c.108.1.10 111860 1rloA 271 1.00e-17 c.108.1.10 111864 1wr8A 231 1.34e-17 c.108.1.10 114836 2rbkA 261 2.24e-17 c.108.1.10 151850 1ymqA 261 4.22e-17 c.108.1.10 123707 3daoA 283 7.35e-17 3fzqA 274 3.23e-15 2b30A 301 5.09e-15 c.108.1.10 127759 1l6rA 227 6.71e-15 c.108.1.10 77768 1j97A 211 7.27e-12 1f5sA c.108.1.4 62753 1f5sA 211 7.71e-12 1f5sA c.108.1.4 59656 1l7mA 211 7.99e-12 c.108.1.4 73664 2b8eA 273 1.31e-11 c.108.1.7 128068 d.220.1.1 128069 3a1dA 287 2.59e-11 2iyeA 263 3.35e-11 1s2oA 244 4.41e-11 c.108.1.10 118846 3a1eA 287 5.52e-11 2voyI 128 1.07e-10 3gygA 289 2.11e-10 1wpgA 994 3.27e-08 b.82.7.1 114806 c.108.1.7 114807 d.220.1.1 114808 f.33.1.1 114809 3m1yA 217 6.76e-08 2dqsA 995 7.32e-08 1mhsA 920 2.52e-07 i.18.1.1 79130 2zxeA 1028 9.29e-07 2hszA 243 1.18e-06 c.108.1.6 136726 3d6jA 225 2.82e-06 3m9lA 205 5.56e-06 2go7A 207 4.05e-05 c.108.1.6 135434 3kdpA 998 5.19e-05 2hi0A 240 5.77e-05 1y8aA 332 1.07e-04 c.108.1.24 145913 2nyvA 222 3.70e-04 2wm8A 187 4.40e-04 2zosA 249 5.14e-04 2no4A 240 7.80e-04 1wzcA 249 9.29e-04 c.108.1.10 121491 2hoqA 241 1.15e-03 2hdoA 209 1.17e-03 c.108.1.6 136345 3mc1A 226 1.53e-03 1nnlA 225 1.94e-03 c.108.1.4 85906 2ah5A 210 2.60e-03 c.108.1.6 126742 1zrnA 232 3.10e-03 c.108.1.1 43323 3fvvA 232 3.19e-03 1x42A 232 4.40e-03 c.108.1.1 121677 2gfhA 260 4.70e-03 c.108.1.6 135096 1u7pA 164 5.33e-03 c.108.1.17 113095 1qq7A 253 5.46e-03 1qq5A c.108.1.1 43329 1qq5A 253 5.49e-03 1qq5A c.108.1.1 43327 1aq6A 253 5.59e-03 1qq5A c.108.1.1 43331 2gmwA 211 8.05e-03 c.108.1.19 147137 2fdrA 229 9.38e-03 c.108.1.6 133319 3l8hA 179 1.25e-02 1ccwA 137 1.76e-02 1be1 c.23.6.1 31238 1xviA 275 2.37e-02 c.108.1.10 116088 1rkuA 206 2.42e-02 c.108.1.11 97627 2o2xA 218 2.62e-02 c.108.1.19 148564 1wviA 257 3.16e-02 c.108.1.14 114915 3hltA 266 4.04e-02 3ddhA 234 4.70e-02 3kd3A 219 5.09e-02 2x4dA 271 5.39e-02 3eprA 264 6.28e-02 3hy0A 441 6.39e-02 2pkeA 251 7.13e-02 2om6A 235 7.25e-02 2bdeA 470 7.75e-02 c.108.1.23 128335 1zs9A 261 7.78e-02 c.108.1.22 125600 3kzxA 231 8.46e-02 2w4mA 270 8.68e-02 3n7uA 351 1.26e-01 2cftA 298 1.70e-01 2fi1A 190 1.71e-01 c.108.1.3 133508 2b0cA 206 1.79e-01 c.108.1.2 127633 3lufA 259 1.84e-01 1swvA 267 1.86e-01 c.108.1.3 112134 3kbbA 216 1.95e-01 1rqlA 267 1.96e-01 c.108.1.3 97750 2q88A 257 2.02e-01 3l4rA 170 2.05e-01 1vjrA 271 2.05e-01 c.108.1.14 100832 2cdnA 201 2.10e-01 c.37.1.1 130289 1fezA 256 2.21e-01 1fezA c.108.1.3 43343 2hx1A 284 2.28e-01 3jukA 281 2.42e-01 2g80A 253 2.43e-01 c.108.1.22 134741 2pibA 216 2.44e-01 1zd3A 555 2.46e-01 c.108.1.2 124930 c.69.1.11 124931 1szwA 379 2.55e-01 d.265.1.4 99047 2oycA 306 2.64e-01 3i28A 555 2.75e-01 1u02A 239 2.78e-01 c.108.1.15 107538 2qvgA 143 2.83e-01 3hdvA 136 3.07e-01 2iw1A 374 3.16e-01 c.87.1.8 137738 2jc9A 555 3.28e-01 2eq9C 41 3.28e-01 2i6xA 211 3.76e-01 1ltqA 301 3.78e-01 c.108.1.9 78208 c.37.1.1 78209 2p3eA 420 4.21e-01 3ed5A 238 4.47e-01 3ib6A 189 4.61e-01 2zf5O 497 4.72e-01 1a4iA 301 4.85e-01 1a4iA c.2.1.7 30278 c.58.1.2 33926 3cprA 304 5.55e-01 3i76A 244 5.87e-01 1dl5A 317 6.33e-01 1dl5A c.66.1.7 64720 d.197.1.1 64721 2eklA 313 6.54e-01 2i33A 258 6.87e-01 2fprA 176 7.17e-01 c.108.1.19 133919 1j3nA 408 7.25e-01 c.95.1.1 84074 c.95.1.1 84075 2hcfA 234 7.40e-01 c.108.1.6 136333 3d8pA 163 7.40e-01 1id1A 153 7.44e-01 1id1A c.2.1.9 62286 1ztcA 221 7.59e-01 d.157.1.11 125635 1rdfA 267 8.52e-01 c.108.1.3 104884 1eo1A 124 8.73e-01 1eo1A c.55.5.1 33739 3e58A 214 8.91e-01 3cnhA 200 9.03e-01 2e9yA 316 9.43e-01 3crnA 132 9.58e-01 2tpsA 227 9.78e-01 2tpsA c.1.3.1 28591 3ezwA 526 9.91e-01 2pr7A 137 1.00e+00 2ho4A 259 1.03e+00 1vicA 262 1.03e+00 c.68.1.13 100756 1bu6O 501 1.08e+00 1glcG c.55.1.4 33499 c.55.1.4 33500 1g67A 225 1.15e+00 c.1.3.1 60311 2cukA 311 1.22e+00 1qwkA 317 1.22e+00 c.1.7.1 96482 3be6A 297 1.27e+00 1xhlA 297 1.43e+00 c.2.1.2 109591 1xpjA 126 1.43e+00 c.108.1.18 115739 1p4cA 380 1.44e+00 c.1.4.1 94100 2c4nA 250 1.45e+00 c.108.1.14 129837 2jerA 389 1.53e+00 d.126.1.6 148019 2zayA 147 1.58e+00 2yxbA 161 1.60e+00 2cxxA 190 1.65e+00 c.37.1.8 131013 3kc2A 352 1.65e+00 3jsyA 213 1.69e+00 1acc 735 1.69e+00 1acc 1accA 735 1.69e+00 f.11.1.1 43828 3cqyA 370 1.78e+00 1ox0A 430 1.85e+00 c.95.1.1 87495 c.95.1.1 87496 1akeA 214 1.90e+00 1zin c.37.1.1 31905 g.41.2.1 45185 2ftsA 419 2.02e+00 b.85.6.1 134079 b.103.1.1 134080 c.57.1.2 134081 3l0bA 184 2.03e+00 3hvdA 548 2.07e+00 3k4oA 266 2.07e+00 3k9cA 289 2.08e+00 3e4rA 324 2.13e+00 1zjjA 263 2.15e+00 3k32A 203 2.18e+00 3fiqA 157 2.19e+00 1n8vA 112 2.33e+00 a.118.21.1 85457 2ganA 190 2.33e+00 d.108.1.1 134889 1h8cA 82 2.39e+00 1h8cA d.15.1.2 37608 2q4oA 215 2.44e+00 c.129.1.1 139872 1ta0A 197 2.62e+00 c.108.1.16 106729 1t35A 191 2.64e+00 c.129.1.1 99108 1te2A 226 2.66e+00 c.108.1.6 106792 3lq1A 578 2.71e+00 1si7A 369 2.76e+00 d.265.1.4 98883 1l8qA 324 2.97e+00 a.4.12.2 77809 c.37.1.20 77810 1zwxA 301 2.99e+00 d.151.1.3 125752 2gn0A 342 3.10e+00 3h7eA 237 3.14e+00 2glfA 450 3.15e+00 1rfmA 344 3.16e+00 c.122.1.1 97385 3dkvA 217 3.20e+00 2qtxA 71 3.23e+00 2g09A 297 3.33e+00 2g76A 335 3.37e+00 2aj2A 208 3.37e+00 d.310.1.1 126840 2r8cA 426 3.49e+00 b.92.1.9 151698 c.1.9.18 151699 1xhfA 123 3.49e+00 c.23.1.1 122003 1t7pA 698 3.52e+00 1t7pA c.55.3.5 33712 e.8.1.1 43005 2qtdA 105 3.52e+00 1ldg 316 3.58e+00 1ceqA 1ru8A 232 3.62e+00 c.26.2.1 97849 1x9mA 698 3.70e+00 c.55.3.5 114999 e.8.1.1 115000 1cydA 244 3.71e+00 1cydA c.2.1.2 29825 1up7A 417 3.74e+00 c.2.1.5 113374 d.162.1.2 113375 2rauA 354 3.91e+00 1r6dA 337 4.01e+00 c.2.1.2 97148 3ktwA 109 4.02e+00 2blnA 305 4.04e+00 b.46.1.1 128734 c.65.1.1 128735 2a3nA 355 4.09e+00 1xiyA 182 4.10e+00 c.47.1.10 122022 1mb3A 124 4.12e+00 c.23.1.1 78907 1iyxA 432 4.21e+00 c.1.11.1 83815 d.54.1.1 83816 2x26A 308 4.27e+00 3l5kA 250 4.30e+00 1sviA 195 4.31e+00 c.37.1.8 106048 3i3wA 443 4.33e+00 3cm0A 186 4.34e+00 2ebdA 309 4.52e+00 2qsjA 154 4.67e+00 3iesA 551 4.71e+00 1rpxA 230 4.81e+00 1rpxA c.1.2.2 28536 1jvnA 555 4.81e+00 c.1.2.1 67355 c.23.16.1 67356 2klaA 106 4.81e+00 3dgfC 122 4.83e+00 3k2gA 364 4.85e+00 2c2xA 281 4.87e+00 3m7vA 413 5.00e+00 1mxgA 435 5.07e+00 b.71.1.1 85193 c.1.8.1 85194 1tqjA 230 5.24e+00 c.1.2.2 107228 1ebuA 358 5.26e+00 1ebuA c.2.1.3 30035 d.81.1.2 39950 1u8tA 129 5.35e+00 c.23.1.1 113192 1be1 137 5.37e+00 1be1 3gnhA 403 5.46e+00 1zxiB 809 5.48e+00 d.41.1.1 125774 d.133.1.1 125775 1n62B 809 5.49e+00 d.41.1.1 80092 d.133.1.1 80093 1jv4A 162 5.56e+00 b.60.1.1 67343 1l1qA 186 5.56e+00 c.61.1.1 77653 3dl0A 216 5.58e+00 1lkdA 297 5.59e+00 d.32.1.3 78059 d.32.1.3 78060 1zndA 174 5.59e+00 b.60.1.1 125380 1han 297 5.62e+00 1han 2qh5A 308 5.65e+00 1glaG 501 5.70e+00 1glcG c.55.1.4 33507 c.55.1.4 33508 3l6sA 485 5.75e+00 1xrsB 262 5.77e+00 c.23.6.1 115884 d.230.4.1 115885 2zeqA 78 5.79e+00 d.15.1.1 154405 3a63A 365 5.86e+00 1jbeA 128 5.96e+00 3chy c.23.1.1 62845 1up6A 416 6.03e+00 c.2.1.5 107976 d.162.1.2 107977 3gu2A 336 6.13e+00 1i06A 180 6.17e+00 1mup b.60.1.1 27131 2e2oA 299 6.18e+00 3kvtA 115 6.21e+00 d.42.1.2 38642 3kd8A 399 6.25e+00 3ed3A 298 6.26e+00 1t2dA 322 6.31e+00 c.2.1.5 99084 d.162.1.1 99085 1e6mA 128 6.36e+00 3chy c.23.1.1 31039 3chy 128 6.37e+00 3chy 2bb3A 221 6.38e+00 c.90.1.1 128257 2wu9A 442 6.41e+00 3gedA 247 6.49e+00 2hhlA 195 6.49e+00 1wn1A 356 6.62e+00 1e4yA 214 6.69e+00 1zin c.37.1.1 31901 g.41.2.1 45181 2q82A 129 6.73e+00 2vvrA 149 6.83e+00 1nuiA 255 6.83e+00 e.13.1.2 86194 g.41.3.2 86195 2bwjA 199 6.87e+00 3gl9A 122 6.93e+00 2cu3A 64 7.09e+00 d.15.3.2 146428 2fssA 365 7.19e+00 1dz3A 130 7.20e+00 1dz3A c.23.1.1 31105 1qy1A 174 7.41e+00 b.60.1.1 96568 1lpbB 449 7.42e+00 1gpl b.12.1.2 23643 c.69.1.19 34791 3gu9A 331 7.42e+00 3htwA 328 7.48e+00 3fdkA 323 7.53e+00 2zc1A 333 7.54e+00 1xkqA 280 7.55e+00 c.2.1.2 115417 1zmaA 118 7.61e+00 c.47.1.1 125354 1kw3B 292 7.66e+00 d.32.1.3 77549 d.32.1.3 77550 1vp8A 201 7.71e+00 c.49.1.2 113947 2yutA 207 7.71e+00 2j6iA 364 7.73e+00 1glcG 501 7.80e+00 1glcG c.55.1.4 33519 c.55.1.4 33520 1lngA 87 7.91e+00 d.201.1.1 74045 3gu1A 337 7.97e+00 3giyA 380 7.99e+00 3kucB 81 8.01e+00 3ebvA 302 8.03e+00 2c7yA 404 8.15e+00 2fueA 262 8.31e+00 c.108.1.10 134119 2r2jA 382 8.36e+00 3gthA 337 8.38e+00 1lf7A 182 8.40e+00 b.60.1.1 73878 2z2vA 365 8.41e+00 1guaB 81 8.43e+00 1c1yB d.15.1.5 37619 1lvk 762 8.45e+00 1lvk 2eu8A 216 8.49e+00 1p3jA 217 8.51e+00 c.37.1.1 94022 g.41.2.1 94023 3abiA 365 8.56e+00 2qr3A 140 8.58e+00 1k07A 263 8.63e+00 d.157.1.1 77218 2oyoA 196 8.73e+00 a.152.1.3 149068 1rpnA 335 8.74e+00 c.2.1.2 97708 1ebfA 358 8.76e+00 1ebuA c.2.1.3 30033 d.81.1.2 39948 3jurA 448 8.80e+00 1c1yB 77 8.84e+00 1c1yB d.15.1.5 37618 2v94A 107 9.09e+00 d.12.1.3 152795 1g8xA 1010 9.14e+00 1lvk k.1.1.1 46378 2akaA 776 9.17e+00 2z2iA 191 9.20e+00 3mmpF 589 9.34e+00 3gtfA 337 9.58e+00 3gtxA 339 9.62e+00 2znmA 195 9.70e+00 1wl4A 397 9.73e+00 1ui0A 205 9.83e+00 c.18.1.2 99411 3mahA 157 9.85e+00 1q7gA 359 9.85e+00 c.2.1.3 96038 d.81.1.2 96039 1qyiA 384 9.91e+00 c.108.1.13 96595 1yb0A 159 9.98e+00 d.118.1.1 122865 1wmaA 276 9.99e+00 c.2.1.2 121042 3cnbA 143 1.00e+01 1xknA 355 1.02e+01 d.126.1.6 115414 1hn9A 317 1.03e+01 1hn9A c.95.1.2 35977 c.95.1.2 35978 2j66A 428 1.03e+01 1whzA 70 1.05e+01 d.50.3.2 114656 1f3yA 165 1.05e+01 d.113.1.1 59635 3mkvA 426 1.05e+01 2j4jA 226 1.06e+01 2ghtA 181 1.06e+01 3etrC 755 1.08e+01 2yweA 600 1.08e+01 1vk2A 204 1.08e+01 c.18.1.2 100845 3be4A 217 1.08e+01 1z2zA 446 1.09e+01 1z0wA 207 1.10e+01 3lw7A 179 1.10e+01 2rgxA 206 1.10e+01 1rmwA 212 1.11e+01 1l0iA 78 1.12e+01 a.28.1.1 77643 3k31A 296 1.12e+01 1hnjA 317 1.13e+01 1hn9A c.95.1.2 35969 c.95.1.2 35970 1fiqC 763 1.14e+01 1fiqC d.41.1.1 38588 d.133.1.1 41418 1t8kA 77 1.14e+01 a.28.1.1 106666 3gzuA 800 1.14e+01 2hafA 211 1.15e+01 d.310.1.1 136286 3hmaA 157 1.16e+01 1srrA 124 1.16e+01 1dz3A c.23.1.1 31110 1tf5A 844 1.16e+01 a.162.1.1 106834 a.172.1.1 106835 c.37.1.19 106836 c.37.1.19 106837 3b9jC 763 1.18e+01 d.41.1.1 155004 d.133.1.1 155005 2wuaA 440 1.19e+01 3ecsA 315 1.19e+01 2ob3A 330 1.20e+01 2ieeA 271 1.20e+01 1ceqA 316 1.21e+01 1ceqA c.2.1.5 30163 d.162.1.1 42130 3foaA 510 1.21e+01 2b82A 211 1.22e+01 c.108.1.12 128057 1i0dA 332 1.22e+01 1pscA c.1.9.3 61487 1vf1A 229 1.23e+01 3gtiA 337 1.23e+01 1eywA 331 1.24e+01 1pscA c.1.9.3 29057 1mvoA 136 1.24e+01 c.23.1.1 79513 1yioA 208 1.25e+01 a.4.6.2 123326 c.23.1.1 123327 2f82A 450 1.26e+01 1ox6A 555 1.26e+01 c.1.2.1 87505 c.23.16.1 87506 2o4cA 380 1.27e+01 2ef0A 301 1.28e+01 2bgxA 261 1.29e+01 a.20.1.1 128504 d.118.1.1 128505 3d2yA 261 1.30e+01 2cdcA 366 1.31e+01 3eb8A 358 1.31e+01 2kvrA 130 1.33e+01 2ox1A 196 1.33e+01 2fa3A 450 1.33e+01 2za0A 184 1.34e+01 1pscA 365 1.35e+01 1pscA c.1.9.3 29058 2q3bA 313 1.36e+01 2p4zA 284 1.37e+01 1dxy 333 1.37e+01 1dxy 1dxyA 333 1.37e+01 c.2.1.4 30094 c.23.12.1 31354 2ar9A 278 1.38e+01 2c95A 196 1.39e+01 3bq9A 460 1.39e+01 2pjmA 226 1.40e+01 3ixqA 226 1.40e+01 2bjqA 345 1.40e+01 b.169.1.1 128626 b.169.1.1 128627 2dhoA 235 1.41e+01 3lv0A 267 1.41e+01 2czcA 334 1.42e+01 c.2.1.3 145052 d.81.1.1 131044 2g3mA 693 1.43e+01 2acaA 189 1.43e+01 d.63.1.2 126545 1dmgA 225 1.44e+01 1dmgA c.22.1.1 31036 3fo8D 283 1.44e+01 3i3yA 299 1.44e+01 3g8dA 444 1.44e+01 2r2qA 110 1.46e+01 1sa3A 262 1.47e+01 c.52.1.23 105400 2e7jA 371 1.47e+01 c.67.1.9 146704 1vjtA 483 1.48e+01 c.2.1.5 100833 d.162.1.2 100834 1goxA 369 1.48e+01 c.1.4.1 28607 1gox 370 1.48e+01 1gox 1l9gA 192 1.49e+01 c.18.1.2 84568 1w6tA 444 1.49e+01 c.1.11.1 120670 d.54.1.1 120671 1y56B 382 1.50e+01 2hqsC 118 1.50e+01 d.79.7.1 136666 2d2jA 329 1.52e+01 c.1.9.3 131175 1zesA 125 1.53e+01 c.23.1.1 124994 3c86A 328 1.53e+01 1y88A 199 1.53e+01 a.60.4.3 116560 c.52.1.30 116561 2icjA 233 1.54e+01 1xkyA 301 1.54e+01 c.1.10.1 122094 1rvv1 154 1.54e+01 1rvv1 1fp4A 492 1.55e+01 c.92.2.3 76187 1d0yA 761 1.56e+01 1lvk b.34.3.1 24581 c.37.1.9 32178 1eblA 317 1.57e+01 1hn9A c.95.1.2 35973 c.95.1.2 35974 3lupA 285 1.57e+01 1ass 159 1.58e+01 1a6dA 1assA 159 1.58e+01 c.8.5.2 30818 2ojpA 292 1.59e+01 1m1nA 491 1.60e+01 c.92.2.3 78417 1bh5A 183 1.61e+01 1qipA d.32.1.1 38476 2qubA 615 1.61e+01 3llxA 376 1.61e+01 2r44A 331 1.62e+01 3fi9A 343 1.64e+01 2czdA 208 1.64e+01 c.1.2.3 131045 1ekeA 230 1.65e+01 1ekeA c.55.3.1 33572 1oapA 109 1.67e+01 d.79.7.1 92706 3gs6A 340 1.69e+01 2fepA 289 1.69e+01 3ct7A 231 1.71e+01 3ctlA 231 1.71e+01 2zsjA 352 1.71e+01 1e0cA 271 1.72e+01 1e0cA c.46.1.2 32717 c.46.1.2 32718 3kffA 162 1.72e+01 2hlvA 160 1.73e+01 2az4A 429 1.73e+01 d.157.1.10 127597 1h3fA 432 1.74e+01 c.26.1.1 76631 d.66.1.4 76632 2bibA 547 1.78e+01 b.109.1.1 128581 d.157.1.8 128582 2g45A 129 1.78e+01 g.44.1.5 145182 3kudB 81 1.79e+01 3cjkB 75 1.81e+01 1a6dB 543 1.82e+01 1a6dA 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