# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w25A 459 8.19e-14 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 3gt7A 154 8.67e-14 3cg4A 142 1.07e-13 1ys7A 233 1.23e-13 a.4.6.1,c.23.1.1 123961,123962 3cfyA 137 1.28e-13 2oqrA 230 1.57e-13 3dgfC 122 1.65e-13 3gl9A 122 1.85e-13 3c3mA 138 1.90e-13 3crnA 132 2.09e-13 1kgsA 225 2.13e-13 a.4.6.1,c.23.1.1 68596,68597 2zwmA 130 2.53e-13 1s8nA 205 2.57e-13 c.23.1.1 105374 3lufA 259 3.04e-13 2zayA 147 3.56e-13 2pl1A 121 3.64e-13 c.23.1.1 149610 2jbaA 127 3.66e-13 3lteA 132 3.67e-13 2qzjA 136 4.16e-13 3h1gA 129 4.16e-13 1l5zA 155 4.43e-13 c.23.1.1 77722 1zh2A 121 4.50e-13 c.23.1.1 125069 3khtA 144 5.71e-13 1yioA 208 5.73e-13 a.4.6.2,c.23.1.1 123326,123327 3cnbA 143 5.79e-13 1zesA 125 6.64e-13 c.23.1.1 124994 1u8tA 129 7.10e-13 c.23.1.1 113192 3gwgA 129 7.42e-13 1qkkA 155 7.60e-13 c.23.1.1 31104 1ab5A 125 7.73e-13 c.23.1.1 31056 3h5iA 140 7.99e-13 1ab6A 125 8.20e-13 c.23.1.1 31054 1mvoA 136 8.27e-13 c.23.1.1 79513 3grcA 140 8.52e-13 3h1fA 129 8.90e-13 3f6pA 120 9.43e-13 3hv2A 153 1.01e-12 1zgzA 122 1.05e-12 c.23.1.1 125065 3i5aA 334 1.19e-12 1mb3A 124 1.19e-12 c.23.1.1 78907 1e6mA 128 1.22e-12 c.23.1.1 31039 1xhfA 123 1.32e-12 c.23.1.1 122003 1jbeA 128 1.32e-12 c.23.1.1 62845 3c97A 140 1.33e-12 3hdgA 137 1.46e-12 3a10A 116 1.54e-12 2a9oA 120 1.56e-12 c.23.1.1 126444 1b00A 127 1.56e-12 c.23.1.1 31122 1dbwA 126 1.60e-12 c.23.1.1 31095 3cg0A 140 1.67e-12 3kcnA 151 1.72e-12 1dcfA 136 1.82e-12 c.23.1.2 31124 2vuhB 139 1.88e-12 2gkgA 127 2.03e-12 1p2fA 220 2.13e-12 a.4.6.1,c.23.1.1 87720,87721 2qr3A 140 2.16e-12 2qxyA 142 2.23e-12 1srrA 124 2.41e-12 c.23.1.1 31110 3jteA 143 2.44e-12 2jk1A 139 2.66e-12 3luaA 140 2.67e-12 3chy 128 3.00e-12 2rjnA 154 3.05e-12 1k66A 149 3.38e-12 c.23.1.1 90941 1k68A 140 3.49e-12 c.23.1.1 90943 1tmyA 120 3.55e-12 c.23.1.1 31083 1a04A 215 3.61e-12 a.4.6.2,c.23.1.1 16234,31089 1i3cA 149 3.70e-12 c.23.1.1 71112 3hebA 152 3.77e-12 2r25B 133 3.80e-12 c.23.1.1 151530 3hdvA 136 4.17e-12 3eulA 152 4.47e-12 3breA 358 4.60e-12 3cz5A 153 4.70e-12 1oxkB 134 5.04e-12 c.23.1.1 93691 1dc7A 124 5.32e-12 c.23.1.1 31093 3b2nA 133 5.41e-12 1u0sY 118 6.00e-12 c.23.1.1 107566 3hzhA 157 6.91e-12 2plnA 137 7.24e-12 3f6cA 134 7.66e-12 2qvgA 143 9.63e-12 3ktoA 136 9.92e-12 3i42A 127 1.15e-11 1dz3A 130 1.21e-11 c.23.1.1 31105 1a2oA 349 1.68e-11 c.23.1.1,c.40.1.1 31120,32479 3cu5A 141 2.33e-11 2b4aA 138 4.05e-11 c.23.1.1 127817 2qv0A 143 5.71e-11 3eqzA 135 6.89e-11 2rdmA 132 1.34e-10 3ilhA 146 1.40e-10 3eodA 130 3.21e-10 3kyjB 145 1.00e-09 2qsjA 154 3.74e-09 3kloA 225 9.22e-09 1qo0D 196 1.94e-08 c.23.1.3 31125 3cloA 258 9.99e-06 2ch4A 320 8.97e-05 b.40.7.1,d.122.1.3 130447,130448 1mu5A 471 0.002112 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 1b3qA 379 0.3755 a.30.2.1,b.40.7.1,d.122.1.3 16993,25454,41112 1c3oB 382 0.8736 c.8.3.1,c.23.16.1 30744,31421 1wv2A 265 0.9459 c.1.31.1 114910 1cs0B 382 1.029 c.8.3.1,c.23.16.1 30740,31417 3kyiB 145 1.158 1gpmA 525 1.199 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2tpsA 227 1.243 c.1.3.1 28591 3gbgA 276 1.429 1h5yA 253 1.639 c.1.2.1 65638 3memA 457 1.729 1xm3A 264 2.089 c.1.31.1 115461 5reqA 727 2.175 c.1.19.1,c.23.6.1 29632,31259 1reqA 727 2.251 c.1.19.1,c.23.6.1 29620,31247 2htmA 268 2.640 1bqgA 451 2.673 c.1.11.2,d.54.1.1 29217,38861 1bqg 451 3.540 2z6iA 332 3.614 1sjdA 368 4.146 c.1.11.2,d.54.1.1 105632,105633 1r0mA 375 4.295 c.1.11.2,d.54.1.1 104747,104748 2a0nA 265 4.965 c.1.2.1 125961 1a53 247 5.137 1ec7A 446 5.386 c.1.11.2,d.54.1.1 29218,38862 3bw2A 369 5.537 1wueA 386 5.619 c.1.11.2,d.54.1.1 114892,114893 1wl8A 189 5.803 c.23.16.1 120997 1a9xB 379 6.132 c.8.3.1,c.23.16.1 30732,31409 2oz8A 389 6.685 2oo6A 409 6.780 3go2A 409 6.855 2vycA 755 7.002 1xi3A 215 7.258 c.1.3.1 109601 3ekgA 404 7.263 1qdlB 195 8.195 c.23.16.1 31437 3mznA 450 8.447 1c30B 382 8.586 c.8.3.1,c.23.16.1 30736,31413 1jdfA 447 8.758 c.1.11.2,d.54.1.1 62897,62898 2gjlA 328 8.809 1ccwA 137 9.166 c.23.6.1 31238 1m1nB 522 9.199 c.92.2.3 78418 3fz9A 112 9.215 1sqgA 429 9.491 a.79.1.3,c.66.1.38 105912,105913 2p8bA 369 9.772 1jr1A 514 10.79 d.37.1.1,c.1.5.1 144358,63241 2yxbA 161 10.89 1qh8B 519 11.03 c.92.2.3 35634 2oz3A 404 11.11 3kp1A 763 11.22 1nt2A 210 11.28 c.66.1.3 86149 3iipA 256 11.58 2pgwA 384 11.63 2i2xB 258 11.80 1jjeA 222 12.04 d.157.1.1 63117 1thfD 253 12.27 c.1.2.1 28535 3cniA 156 12.32 1y80A 210 12.32 1kbjA 412 12.45 c.1.4.1 72280 1i1qB 192 12.66 c.23.16.1 61544 2qdeA 397 13.11 2zc8A 369 13.35 2vwsA 267 13.42 2qr6A 393 13.53 2hxtA 441 13.57 1he2A 206 13.59 c.2.1.2 60966 2qddA 378 13.78 1tb3A 352 14.04 c.1.4.1 119205 1y0eA 223 14.35 c.1.2.5 116297 3igsA 232 14.48 1izcA 339 14.63 c.1.12.5 83838 3ce9A 354 14.74 1g8sA 230 15.01 c.66.1.3 90507 2qgyA 391 15.20 1yxyA 234 15.23 c.1.2.5 124203 2og9A 393 15.46 2ox4A 403 15.63 2hneA 436 15.67 1mdlA 359 15.89 c.1.11.2,d.54.1.1 29247,38891 3hojA 248 16.49 3iieA 401 16.64 3aekA 437 16.82 2gdqA 382 17.02 c.1.11.2,d.54.1.1 135020,135021 1yeyA 444 17.06 c.1.11.2,d.54.1.1 116664,116665 2yzrA 330 17.23 1twdA 256 17.28 c.1.30.1 107397 2ovlA 371 17.97 1ep3A 311 18.65 c.1.4.1 28597 1hslA 238 18.95 c.94.1.1 35804 1mucA 373 18.99 c.1.11.2,d.54.1.1 29236,38880 3mkcA 394 19.12 1tkkA 366 19.14 c.1.11.2,d.54.1.1 107089,107090 1goxA 369 19.24 c.1.4.1 28607 3fv9A 386 19.68 1o1yA 239 19.69 c.23.16.1 86554 2pp3A 398 19.80 2gl5A 410 20.74 c.1.11.2,d.54.1.1 135336,135337 1lst 239 20.96 1g8aA 227 21.11 c.66.1.3 90506 3i6eA 385 22.72 3iioA 262 25.02 1dxeA 256 26.10 c.1.12.5 29310 1o6cA 388 26.19 c.87.1.3 92565 3iivA 263 26.69 3hl0A 353 26.84 3c3pA 210 27.14 3dg6A 367 27.51 1k7yA 577 27.88 a.46.1.1,c.23.6.1,d.173.1.1 68272,68273,68274 2pceA 386 28.28 2yweA 600 28.60 2qjjA 402 29.12 1j97A 211 29.26 c.108.1.4 62753 2rduA 387 30.09 1yadA 221 33.64 1lstA 239 34.14 c.94.1.1 35755 1o5oA 221 34.65 c.61.1.1 92509 2p0iA 456 34.84 1m2eA 135 35.39 c.23.1.5 78478 2oqhA 385 36.09 1vhcA 224 36.91 c.1.10.1 100661 1ta9A 450 37.10 3ct2A 382 37.17 3mqtA 394 37.85 1tqxA 227 38.35 c.1.2.2 112614 1fwrA 213 39.24 c.1.10.1 29164 1jj7A 260 39.27 c.37.1.12 63114 2o56A 407 39.46 3es7A 391 39.47 3fxgA 455 40.16 1jg1A 235 42.25 c.66.1.7 66661 3gy1A 408 43.94 2v5jA 287 44.37 3dfhA 394 44.38 1vh7A 265 44.78 c.1.2.1 100646 2hzgA 401 45.12 2rexB 197 45.49 2oyrA 258 46.14 c.66.1.55 149078 2tysA 268 46.16 c.1.2.4 28572 3i4kA 383 46.23 2nliA 368 46.52 1hyuA 521 47.96 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 2nqlA 388 48.71 3fcpA 381 49.06 1m2xA 223 49.64 d.157.1.1 84764 2qe6A 274 49.75 2pozA 392 50.95 1ixkA 315 51.39 c.66.1.38 90716 1hdoA 206 51.55 c.2.1.2 60965 1h7wA 1025 51.93 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 2zadA 345 52.51 3brqA 296 52.61 1qpoA 284 52.62 c.1.17.1,d.41.2.1 29561,38597 1nsj 205 53.08 1xrsB 262 53.87 c.23.6.1,d.230.4.1 115884,115885 3h12A 397 54.16 1vl0A 292 55.02 c.2.1.2 108704 1jubA 311 55.45 c.1.4.1 90908 3ik4A 365 55.57 1qguB 519 55.70 c.92.2.3 35626 1l2tA 235 56.25 c.37.1.12 73514 1v4vA 376 57.57 c.87.1.3 100313 1uirA 314 57.85 c.66.1.17 99429 1rfeA 162 58.32 b.45.1.1 111796 1bmtA 246 58.66 a.46.1.1,c.23.6.1 17757,31235 1wpgA 994 58.88 b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1 114806,114807,114808,114809 2ps2A 371 59.12 1jvsA 400 60.36 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 3dgbA 382 60.47 1rd5A 262 61.24 c.1.2.4 111772 1wa3A 205 61.94 c.1.10.1 120802 2nyuA 196 62.20 1r0kA 388 62.75 a.69.3.1,c.2.1.3,d.81.1.3 104723,104724,104725 2nq2C 253 63.30 2xdqA 460 63.43 3ic5A 118 66.18 2zosA 249 66.75 3labA 217 66.99 3ewiA 168 66.99 1nu5A 370 67.25 c.1.11.2,d.54.1.1 92183,92184 1wmdA 434 68.64 b.18.1.20,c.41.1.1 109408,109409 1ak5 503 69.37 3fyyA 391 69.60 3h6gA 395 70.91 3gjyA 317 71.74 2du2A 374 72.31 1liiA 363 72.88 c.72.1.1 73921 3e8mA 164 73.17 2hcfA 234 73.60 c.108.1.6 136333 1q0qA 406 73.84 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 2cb1A 412 74.00 2podA 410 74.03 1o4uA 285 74.32 c.1.17.1,d.41.2.1 86624,86625 2qltA 275 74.77 1fbnA 230 74.81 c.66.1.3 34181 1wzcA 249 76.23 c.108.1.10 121491 3h7vA 330 76.34 1jq5A 370 76.37 e.22.1.2 67084 1qcwA 410 76.57 c.1.4.1 28622 2i6xA 211 77.14 1dorA 311 77.27 c.1.4.1 28595 2rdxA 379 77.40 2b8eA 273 78.51 c.108.1.7,d.220.1.1 128068,128069 3hblA 1150 79.32 1wbhA 214 82.11 c.1.10.1 120845 3fasA 260 82.22 2oqyA 391 82.28 1mxsA 225 83.41 c.1.10.1 91494 1jvnA 555 83.69 c.1.2.1,c.23.16.1 67355,67356 2jacA 110 84.36 1cb6A 691 84.62 c.94.1.2,c.94.1.2 35840,35841 1igs 248 84.76 3giyA 380 85.74 1jpnA 296 87.21 a.24.13.1,c.37.1.10 67039,67040 2zruA 368 87.77 1nrwA 288 88.36 c.108.1.10 86128 2eqaA 352 88.53 1xtpA 254 89.13 c.66.1.42 116031 1s2oA 244 89.59 c.108.1.10 118846 1zfjA 491 89.90 d.37.1.1,c.1.5.1 144739,28638