# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w25A 459 7.01e-17 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 3gt7A 154 8.17e-17 2oqrA 230 1.51e-16 1ys7A 233 2.20e-16 a.4.6.1,c.23.1.1 123961,123962 3gl9A 122 2.42e-16 1s8nA 205 3.11e-16 c.23.1.1 105374 3cg4A 142 3.48e-16 2zayA 147 3.94e-16 3lufA 259 4.22e-16 1kgsA 225 4.23e-16 a.4.6.1,c.23.1.1 68596,68597 3cfyA 137 4.31e-16 2zwmA 130 4.78e-16 3crnA 132 5.03e-16 3dgfC 122 5.68e-16 2qzjA 136 6.60e-16 2jbaA 127 6.85e-16 2pl1A 121 8.62e-16 c.23.1.1 149610 3f6pA 120 8.68e-16 3lteA 132 8.87e-16 1zh2A 121 9.46e-16 c.23.1.1 125069 3h1gA 129 9.76e-16 1l5zA 155 1.01e-15 c.23.1.1 77722 1ab5A 125 1.12e-15 c.23.1.1 31056 1ab6A 125 1.20e-15 c.23.1.1 31054 1yioA 208 1.26e-15 a.4.6.2,c.23.1.1 123326,123327 1zesA 125 1.44e-15 c.23.1.1 124994 3cnbA 143 1.48e-15 3cg0A 140 1.64e-15 1u8tA 129 1.83e-15 c.23.1.1 113192 1xhfA 123 1.87e-15 c.23.1.1 122003 1mvoA 136 1.92e-15 c.23.1.1 79513 3c3mA 138 1.98e-15 2a9oA 120 1.99e-15 c.23.1.1 126444 3c97A 140 2.04e-15 3grcA 140 2.05e-15 3i5aA 334 2.22e-15 1zgzA 122 2.50e-15 c.23.1.1 125065 3gwgA 129 2.52e-15 3h1fA 129 2.67e-15 1mb3A 124 2.76e-15 c.23.1.1 78907 1qkkA 155 2.76e-15 c.23.1.1 31104 1b00A 127 2.85e-15 c.23.1.1 31122 1jbeA 128 2.94e-15 c.23.1.1 62845 1e6mA 128 3.15e-15 c.23.1.1 31039 3khtA 144 3.26e-15 3hdgA 137 3.31e-15 3h5iA 140 3.44e-15 2gkgA 127 3.68e-15 3hv2A 153 3.75e-15 3a10A 116 3.75e-15 3jteA 143 5.21e-15 3kcnA 151 5.22e-15 3chy 128 5.65e-15 1dcfA 136 6.30e-15 c.23.1.2 31124 1srrA 124 6.73e-15 c.23.1.1 31110 2jk1A 139 7.05e-15 1a04A 215 7.52e-15 a.4.6.2,c.23.1.1 16234,31089 1dbwA 126 7.83e-15 c.23.1.1 31095 2vuhB 139 8.07e-15 2rjnA 154 8.08e-15 2r25B 133 8.67e-15 c.23.1.1 151530 1p2fA 220 9.57e-15 a.4.6.1,c.23.1.1 87720,87721 1k66A 149 9.64e-15 c.23.1.1 90941 1oxkB 134 9.80e-15 c.23.1.1 93691 1dc7A 124 1.08e-14 c.23.1.1 31093 3eulA 152 1.26e-14 1k68A 140 1.29e-14 c.23.1.1 90943 1i3cA 149 1.30e-14 c.23.1.1 71112 3f6cA 134 1.38e-14 2qxyA 142 1.44e-14 3breA 358 1.50e-14 1tmyA 120 1.56e-14 c.23.1.1 31083 2qr3A 140 1.61e-14 3b2nA 133 1.68e-14 3i42A 127 1.81e-14 3hdvA 136 1.81e-14 3luaA 140 2.00e-14 3hzhA 157 2.18e-14 3cz5A 153 2.28e-14 3hebA 152 2.34e-14 1u0sY 118 2.79e-14 c.23.1.1 107566 2plnA 137 3.42e-14 2qv0A 143 5.82e-14 2qvgA 143 7.13e-14 1a2oA 349 7.29e-14 c.23.1.1,c.40.1.1 31120,32479 1dz3A 130 7.49e-14 c.23.1.1 31105 3ktoA 136 9.02e-14 2rdmA 132 2.83e-13 3cu5A 141 4.33e-13 3ilhA 146 7.65e-13 2b4aA 138 1.15e-12 c.23.1.1 127817 3eodA 130 1.46e-12 3eqzA 135 3.51e-12 3kyjB 145 6.60e-12 2qsjA 154 2.15e-10 3kloA 225 3.45e-10 1qo0D 196 1.50e-09 c.23.1.3 31125 3cloA 258 2.26e-06 2ch4A 320 1.64e-05 b.40.7.1,d.122.1.3 130447,130448 1mu5A 471 0.000742 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 1b3qA 379 0.3201 a.30.2.1,b.40.7.1,d.122.1.3 16993,25454,41112 1xm3A 264 0.3591 c.1.31.1 115461 1cs0B 382 0.7566 c.8.3.1,c.23.16.1 30740,31417 1c3oB 382 0.8397 c.8.3.1,c.23.16.1 30744,31421 1h5yA 253 0.9615 c.1.2.1 65638 2tpsA 227 1.274 c.1.3.1 28591 1wv2A 265 1.354 c.1.31.1 114910 3gbgA 276 1.615 3kyiB 145 1.982 2gjlA 328 2.108 1ec7A 446 2.148 c.1.11.2,d.54.1.1 29218,38862 1thfD 253 2.186 c.1.2.1 28535 1jdfA 447 2.196 c.1.11.2,d.54.1.1 62897,62898 1bqg 451 2.225 2z6iA 332 2.286 1sqgA 429 2.718 a.79.1.3,c.66.1.38 105912,105913 2a0nA 265 2.767 c.1.2.1 125961 1g8aA 227 2.938 c.66.1.3 90506 1vh7A 265 3.031 c.1.2.1 100646 1bqgA 451 3.301 c.1.11.2,d.54.1.1 29217,38861 3memA 457 3.346 3iipA 256 3.437 1gpmA 525 3.471 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1a53 247 3.587 1y0eA 223 3.843 c.1.2.5 116297 1nt2A 210 4.107 c.66.1.3 86149 3fz9A 112 4.112 3iioA 262 4.121 2yzrA 330 4.456 3iivA 263 4.795 2htmA 268 4.951 1lst 239 5.444 3mznA 450 5.600 1qdlB 195 5.617 c.23.16.1 31437 1r0mA 375 5.620 c.1.11.2,d.54.1.1 104747,104748 1a9xB 379 5.768 c.8.3.1,c.23.16.1 30732,31409 1qh8B 519 5.888 c.92.2.3 35634 1c30B 382 5.991 c.8.3.1,c.23.16.1 30736,31413 1sjdA 368 6.368 c.1.11.2,d.54.1.1 105632,105633 1hslA 238 6.554 c.94.1.1 35804 1reqA 727 6.576 c.1.19.1,c.23.6.1 29620,31247 5reqA 727 6.724 c.1.19.1,c.23.6.1 29632,31259 1xi3A 215 6.727 c.1.3.1 109601 1wl8A 189 6.791 c.23.16.1 120997 1jr1A 514 6.812 d.37.1.1,c.1.5.1 144358,63241 2vwsA 267 7.175 2vycA 755 7.442 1yxyA 234 7.921 c.1.2.5 124203 1twdA 256 8.041 c.1.30.1 107397 1wueA 386 8.256 c.1.11.2,d.54.1.1 114892,114893 1m1nB 522 8.724 c.92.2.3 78418 2yxbA 161 9.198 1lstA 239 9.464 c.94.1.1 35755 3aekA 437 9.665 1tqxA 227 9.712 c.1.2.2 112614 2qr6A 393 10.00 3lm8A 222 10.71 2qddA 378 11.53 1g8sA 230 11.59 c.66.1.3 90507 1qpoA 284 11.96 c.1.17.1,d.41.2.1 29561,38597 1kbjA 412 12.08 c.1.4.1 72280 1b0lA 691 12.33 c.94.1.2,c.94.1.2 35847,35848 3k94A 223 12.58 1ep3A 311 12.96 c.1.4.1 28597 1ccwA 137 14.28 c.23.6.1 31238 3bw2A 369 15.05 1rpxA 230 15.22 c.1.2.2 28536 3igsA 232 15.27 1j97A 211 15.50 c.108.1.4 62753 1rfeA 162 15.71 b.45.1.1 111796 2tysA 268 15.92 c.1.2.4 28572 1cb6A 691 16.03 c.94.1.2,c.94.1.2 35840,35841 2zc8A 369 16.16 3ce9A 354 16.22 3fv9A 386 17.94 2oo6A 409 18.83 1y80A 210 19.54 2ox4A 403 19.57 2og9A 393 19.95 2oqhA 385 20.37 1vhcA 224 20.94 c.1.10.1 100661 1dxeA 256 21.44 c.1.12.5 29310 1xbyA 216 22.00 c.1.2.3 121846 1izcA 339 22.10 c.1.12.5 83838 1i7qB 193 22.14 c.23.16.1 61902 3ekgA 404 22.21 3ct2A 382 22.37 1mioB 458 23.55 c.92.2.3 35602 2jacA 110 23.98 3cniA 156 24.05 1m2eA 135 24.32 c.23.1.5 78478 2v5jA 287 24.70 1mdlA 359 25.56 c.1.11.2,d.54.1.1 29247,38891 2ovlA 371 25.86 3kp1A 763 26.13 3dgbA 382 26.37 3hojA 248 26.50 1ta9A 450 26.80 2pceA 386 26.91 1zfjA 491 27.08 d.37.1.1,c.1.5.1 144739,28638 1fwrA 213 27.22 c.1.10.1 29164 3hl0A 353 27.25 1zlqA 502 27.57 c.94.1.1 125253 1tb3A 352 27.83 c.1.4.1 119205 1yeyA 444 28.18 c.1.11.2,d.54.1.1 116664,116665 1i1qB 192 28.67 c.23.16.1 61544 3i6eA 385 28.76 3go2A 409 28.98 1h1yA 228 30.23 c.1.2.2 76506 1jjeA 222 30.39 d.157.1.1 63117 2hxtA 441 30.92 1mucA 373 31.04 c.1.11.2,d.54.1.1 29236,38880 3iieA 401 31.98 1zu0A 529 32.26 2oz8A 389 32.43 1f9mA 112 32.72 c.47.1.1 32736 2pgwA 384 32.88 1s2oA 244 32.94 c.108.1.10 118846 2gdqA 382 33.09 c.1.11.2,d.54.1.1 135020,135021 1vr5A 547 33.18 c.94.1.1 120437 2dkjA 407 34.07 1b1xA 689 34.73 c.94.1.2,c.94.1.2 35865,35866 1rd5A 262 35.00 c.1.2.4 111772 1tkkA 366 35.58 c.1.11.2,d.54.1.1 107089,107090 3i4kA 383 35.64 3iv7A 364 36.02 3fbsA 297 36.76 1o4uA 285 37.02 c.1.17.1,d.41.2.1 86624,86625 1qopA 268 37.36 c.1.2.4 28570 2ia4A 287 37.58 1euaA 213 39.00 c.1.10.1 29155 1h7wA 1025 39.21 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 3es7A 391 39.32 2qdeA 397 39.78 2o7iA 592 39.82 3iebA 218 40.26 2p8bA 369 40.41 3dfhA 394 40.43 2pp3A 398 40.82 2qjjA 402 41.86 1zx0A 236 42.07 c.66.1.16 125757 2dztA 248 42.27 1yadA 221 43.25 2jbmA 299 44.62 1jq5A 370 44.79 e.22.1.2 67084 1l2tA 235 45.02 c.37.1.12 73514 1he2A 206 45.03 c.2.1.2 60966 1o1yA 239 45.63 c.23.16.1 86554 1wbhA 214 46.04 c.1.10.1 120845 1goxA 369 46.06 c.1.4.1 28607 1ii5A 233 46.36 c.94.1.1 62412 1xbiA 120 46.68 d.79.3.1 121840 3dg6A 367 46.75 1qguB 519 46.86 c.92.2.3 35626 1id1A 153 47.46 c.2.1.9 62286 1kfcA 268 47.47 c.1.2.4 77371 3hgjA 349 47.67 1v4vA 376 48.52 c.87.1.3 100313 2xdqA 460 48.83 2zz3A 252 49.25 2gffA 106 50.13 1m2xA 223 50.39 d.157.1.1 84764 2ps2A 371 51.33 2c6qA 351 52.09 1jvnA 555 52.20 c.1.2.1,c.23.16.1 67355,67356 2vhaA 287 52.82 3ik4A 365 53.17 3h6gA 395 53.40 2i2xB 258 53.50 1geqA 248 53.55 c.1.2.4 28589 2yvlA 248 54.86 2pyyA 228 55.07 2hneA 436 56.31 3l0gA 300 56.85 3ctlA 231 56.97 2pfsA 150 57.25 1dpeA 507 57.84 c.94.1.1 35799 3ic5A 118 58.26 3exrA 221 58.60 2pjzA 263 58.66 3h7vA 330 59.06 3e8mA 164 59.09 1igs 248 59.51 2tmdA 729 60.68 c.1.4.1,c.3.1.1,c.4.1.1 28616,30317,30602 1nu5A 370 60.90 c.1.11.2,d.54.1.1 92183,92184 3ct7A 231 61.27 2voyI 128 61.30 2oz3A 404 61.71 2gl5A 410 61.82 c.1.11.2,d.54.1.1 135336,135337 1fbnA 230 62.35 c.66.1.3 34181 1uiuA 502 62.39 c.94.1.1 99434 3eyeA 168 62.88 1dl5A 317 63.05 c.66.1.7,d.197.1.1 64720,64721 2qgyA 391 64.01 1up6A 416 64.70 c.2.1.5,d.162.1.2 107976,107977 1x1oA 286 64.92 3gy1A 408 64.94 2rexB 197 64.99 3l8mA 212 65.13 2wemA 118 65.79 1dctA 324 66.35 c.66.1.26 34244 3jr2A 218 66.73 1o6cA 388 67.22 c.87.1.3 92565 2podA 410 68.34 1z41A 338 69.02 c.1.4.1 124421 2wulA 118 69.02 3n0lA 417 70.10 1qcwA 410 70.31 c.1.4.1 28622 2o56A 407 70.33 2fliA 220 70.42 c.1.2.2 133714 2rduA 387 70.47 2b8eA 273 70.72 c.108.1.7,d.220.1.1 128068,128069 3c3pA 210 71.15 3giyA 380 71.22 1gteA 1025 72.01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 2zz4A 252 73.02 1jubA 311 73.13 c.1.4.1 90908 2is8A 164 73.64 3beoA 375 74.01 1nsj 205 74.41 1uirA 314 75.36 c.66.1.17 99429 3ib0A 345 76.17 2nliA 368 76.58 3g1vA 228 76.73 1wa3A 205 77.11 c.1.10.1 120802 3labA 217 77.15 1vplA 256 77.37 c.37.1.12 113966 1hyuA 521 78.32 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 2e7pA 116 78.37 1wmdA 434 78.44 b.18.1.20,c.41.1.1 109408,109409 1ox6A 555 79.07 c.1.2.1,c.23.16.1 87505,87506 3ewiA 168 79.79 1vkfA 188 80.17 c.1.29.1 108656 2nooA 502 80.45 1dppA 507 82.24 c.94.1.1 35800 1ak5 503 82.28 3gjyA 317 82.36 2h3hA 313 82.42 1vr0A 247 82.58 c.148.1.1 120428 2zz2A 252 82.82 3d5jA 112 82.95 1z47A 355 83.37 2b6dA 345 83.93 c.94.1.2 127985 1ixkA 315 85.35 c.66.1.38 90716 1ir6A 424 85.50 c.107.1.2 71342 1p4cA 380 85.64 c.1.4.1 94100 1l7mA 211 87.91 c.108.1.4 73664