# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3gt7A 154 7.87e-14 1w25A 459 8.44e-14 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 2oqrA 230 8.63e-14 3c3mA 138 1.12e-13 3dgfC 122 1.28e-13 3gl9A 122 1.35e-13 1ys7A 233 1.48e-13 a.4.6.1,c.23.1.1 123961,123962 2zwmA 130 1.94e-13 3h1gA 129 2.07e-13 3h1fA 129 2.41e-13 3gwgA 129 2.94e-13 2jbaA 127 3.19e-13 1kgsA 225 3.40e-13 a.4.6.1,c.23.1.1 68596,68597 3cg4A 142 3.45e-13 3cfyA 137 3.55e-13 3lteA 132 3.85e-13 1s8nA 205 4.17e-13 c.23.1.1 105374 2pl1A 121 4.80e-13 c.23.1.1 149610 2zayA 147 4.92e-13 2qzjA 136 5.24e-13 1u8tA 129 5.41e-13 c.23.1.1 113192 3lufA 259 5.60e-13 3crnA 132 5.83e-13 3c97A 140 5.90e-13 1l5zA 155 5.94e-13 c.23.1.1 77722 1ab6A 125 6.20e-13 c.23.1.1 31054 1mvoA 136 6.25e-13 c.23.1.1 79513 3f6pA 120 6.28e-13 1yioA 208 7.20e-13 a.4.6.2,c.23.1.1 123326,123327 1zesA 125 7.29e-13 c.23.1.1 124994 1qkkA 155 7.48e-13 c.23.1.1 31104 1zh2A 121 7.79e-13 c.23.1.1 125069 3khtA 144 8.02e-13 1mb3A 124 8.03e-13 c.23.1.1 78907 1ab5A 125 8.84e-13 c.23.1.1 31056 3a10A 116 9.16e-13 3grcA 140 9.33e-13 3cnbA 143 9.46e-13 1e6mA 128 9.89e-13 c.23.1.1 31039 2a9oA 120 1.12e-12 c.23.1.1 126444 2qr3A 140 1.17e-12 1b00A 127 1.25e-12 c.23.1.1 31122 1dbwA 126 1.28e-12 c.23.1.1 31095 2gkgA 127 1.30e-12 1jbeA 128 1.35e-12 c.23.1.1 62845 1zgzA 122 1.40e-12 c.23.1.1 125065 1xhfA 123 1.42e-12 c.23.1.1 122003 2r25B 133 1.63e-12 c.23.1.1 151530 3kcnA 151 1.72e-12 1dcfA 136 1.80e-12 c.23.1.2 31124 3hv2A 153 1.88e-12 3hdgA 137 1.93e-12 3cg0A 140 1.99e-12 3h5iA 140 2.01e-12 3chy 128 2.09e-12 3i5aA 334 2.12e-12 1p2fA 220 2.16e-12 a.4.6.1,c.23.1.1 87720,87721 1a04A 215 2.30e-12 a.4.6.2,c.23.1.1 16234,31089 1srrA 124 2.42e-12 c.23.1.1 31110 2jk1A 139 2.55e-12 2qxyA 142 2.70e-12 1i3cA 149 2.71e-12 c.23.1.1 71112 1tmyA 120 2.77e-12 c.23.1.1 31083 3eulA 152 2.79e-12 2plnA 137 2.84e-12 3hebA 152 2.92e-12 3hdvA 136 3.38e-12 3f6cA 134 3.40e-12 1k68A 140 3.41e-12 c.23.1.1 90943 3hzhA 157 3.52e-12 3b2nA 133 3.53e-12 2vuhB 139 3.65e-12 1oxkB 134 4.47e-12 c.23.1.1 93691 2rjnA 154 4.55e-12 3cz5A 153 4.86e-12 1k66A 149 5.12e-12 c.23.1.1 90941 3luaA 140 5.24e-12 3jteA 143 5.31e-12 2qvgA 143 6.28e-12 1dc7A 124 7.24e-12 c.23.1.1 31093 1u0sY 118 7.25e-12 c.23.1.1 107566 3i42A 127 7.40e-12 3breA 358 8.67e-12 3ktoA 136 9.90e-12 1dz3A 130 1.14e-11 c.23.1.1 31105 2qv0A 143 2.78e-11 2rdmA 132 4.67e-11 1a2oA 349 5.30e-11 c.23.1.1,c.40.1.1 31120,32479 3cu5A 141 5.46e-11 2b4aA 138 5.50e-11 c.23.1.1 127817 3eqzA 135 5.68e-11 3ilhA 146 1.43e-10 3eodA 130 1.81e-10 3kyjB 145 4.60e-10 2qsjA 154 4.91e-09 3kloA 225 7.76e-09 1qo0D 196 4.07e-08 c.23.1.3 31125 3cloA 258 1.75e-06 2ch4A 320 8.98e-06 b.40.7.1,d.122.1.3 130447,130448 1mu5A 471 0.000896 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 3gbgA 276 0.1548 1b3qA 379 0.1644 a.30.2.1,b.40.7.1,d.122.1.3 16993,25454,41112 1cs0B 382 0.6075 c.8.3.1,c.23.16.1 30740,31417 1xm3A 264 0.6615 c.1.31.1 115461 1c3oB 382 0.7283 c.8.3.1,c.23.16.1 30744,31421 1bqg 451 0.9852 3memA 457 1.045 1ec7A 446 1.113 c.1.11.2,d.54.1.1 29218,38862 1gpmA 525 1.232 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1bqgA 451 1.598 c.1.11.2,d.54.1.1 29217,38861 1h5yA 253 1.846 c.1.2.1 65638 1jdfA 447 2.203 c.1.11.2,d.54.1.1 62897,62898 1wv2A 265 2.264 c.1.31.1 114910 3kyiB 145 2.512 1thfD 253 2.698 c.1.2.1 28535 1vh7A 265 3.001 c.1.2.1 100646 2a0nA 265 3.116 c.1.2.1 125961 2tpsA 227 3.290 c.1.3.1 28591 3mznA 450 4.723 2z6iA 332 4.799 1a53 247 5.385 2gjlA 328 5.450 1y0eA 223 5.650 c.1.2.5 116297 1sjdA 368 5.715 c.1.11.2,d.54.1.1 105632,105633 1a9xB 379 6.422 c.8.3.1,c.23.16.1 30732,31409 3iipA 256 6.672 2htmA 268 6.885 1c30B 382 7.239 c.8.3.1,c.23.16.1 30736,31413 3iivA 263 7.641 1wueA 386 7.662 c.1.11.2,d.54.1.1 114892,114893 3iioA 262 7.669 3ekgA 404 7.762 1r0mA 375 7.947 c.1.11.2,d.54.1.1 104747,104748 1m1nB 522 8.578 c.92.2.3 78418 3bw2A 369 8.725 3fz9A 112 8.983 2yzrA 330 9.765 2og9A 393 9.906 1wl8A 189 10.49 c.23.16.1 120997 1ep3A 311 10.85 c.1.4.1 28597 1qh8B 519 10.96 c.92.2.3 35634 2hxtA 441 11.41 3cniA 156 12.20 1jjeA 222 12.52 d.157.1.1 63117 2oo6A 409 12.58 2tysA 268 13.23 c.1.2.4 28572 1tkkA 366 14.27 c.1.11.2,d.54.1.1 107089,107090 2p8bA 369 14.36 2vwsA 267 14.63 3igsA 232 14.86 1xi3A 215 15.30 c.1.3.1 109601 2qddA 378 15.50 2pp3A 398 15.61 1qdlB 195 16.20 c.23.16.1 31437 2pgwA 384 17.17 1yeyA 444 17.35 c.1.11.2,d.54.1.1 116664,116665 2qdeA 397 17.35 1mdlA 359 17.40 c.1.11.2,d.54.1.1 29247,38891 1kbjA 412 17.45 c.1.4.1 72280 2oz8A 389 17.89 1reqA 727 18.82 c.1.19.1,c.23.6.1 29620,31247 2zc8A 369 19.87 3aekA 437 20.22 1ccwA 137 20.27 c.23.6.1 31238 3h7vA 330 20.30 1jr1A 514 20.39 d.37.1.1,c.1.5.1 144358,63241 2ovlA 371 20.50 2ox4A 403 20.66 1yxyA 234 21.06 c.1.2.5 124203 2qr6A 393 21.12 3lhdA 253 21.89 3mkcA 394 22.00 3go2A 409 22.07 5reqA 727 22.32 c.1.19.1,c.23.6.1 29632,31259 1g8aA 227 22.59 c.66.1.3 90506 1j97A 211 23.64 c.108.1.4 62753 1dl5A 317 24.25 c.66.1.7,d.197.1.1 64720,64721 3fv9A 386 24.63 2oz3A 404 26.03 1i7qB 193 26.33 c.23.16.1 61902 1tb3A 352 26.47 c.1.4.1 119205 2gdqA 382 26.83 c.1.11.2,d.54.1.1 135020,135021 3mb5A 255 28.16 2hneA 436 28.53 1i1qB 192 29.18 c.23.16.1 61544 3i6eA 385 29.41 3mqtA 394 29.64 1mucA 373 29.72 c.1.11.2,d.54.1.1 29236,38880 2pceA 386 30.14 2yxeA 215 31.11 1lst 239 32.47 2jacA 110 34.00 3ct2A 382 34.14 1nt2A 210 34.19 c.66.1.3 86149 3dg6A 367 34.71 2yweA 600 35.77 3hojA 248 36.94 3es7A 391 36.99 1o54A 277 37.11 c.66.1.13 92482 2yxbA 161 37.19 1y80A 210 38.11 2oqhA 385 38.30 1qopA 268 39.68 c.1.2.4 28570 1twdA 256 39.70 c.1.30.1 107397 3ce9A 354 40.60 3ik4A 365 40.64 3iieA 401 41.00 1sqgA 429 41.64 a.79.1.3,c.66.1.38 105912,105913 3ic5A 118 42.87 1he2A 206 42.91 c.2.1.2 60966 1mioB 458 43.34 c.92.2.3 35602 2ps2A 371 43.42 1qguB 519 44.21 c.92.2.3 35626 1hyuA 521 44.75 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 3k94A 223 44.98 3h12A 397 45.74 2v5jA 287 46.93 1o5oA 221 47.45 c.61.1.1 92509 1rd5A 262 47.57 c.1.2.4 111772 3hl0A 353 47.66 2gl5A 410 47.66 c.1.11.2,d.54.1.1 135336,135337 1hslA 238 47.80 c.94.1.1 35804 3fxgA 455 48.24 2o56A 407 48.29 2pozA 392 48.30 2p0iA 456 49.10 2qgyA 391 49.62 1rfeA 162 49.71 b.45.1.1 111796 1efaA 333 49.89 a.35.1.5,c.93.1.1 17106,35691 1o1yA 239 52.00 c.23.16.1 86554 3dfhA 394 52.69 3i4kA 383 53.01 1nrwA 288 53.93 c.108.1.10 86128 2zadA 345 53.94 3fbsA 297 54.35 1qpoA 284 54.46 c.1.17.1,d.41.2.1 29561,38597 2qjjA 402 54.77 3h2bA 203 56.17 1jg1A 235 56.84 c.66.1.7 66661 2xdqA 460 57.00 2nyuA 196 57.08 3dgbA 382 57.21 3fyyA 391 57.87 1tqxA 227 58.23 c.1.2.2 112614 1pii 452 58.58 2vycA 755 58.71 1izcA 339 58.92 c.1.12.5 83838 2oztA 332 59.47 2pwyA 258 60.18 1lstA 239 61.27 c.94.1.1 35755 2rduA 387 61.75 1x1oA 286 62.45 2hzgA 401 62.52 1s2oA 244 63.42 c.108.1.10 118846 2oqyA 391 63.49 1goxA 369 63.59 c.1.4.1 28607 2voyI 128 64.01 2dkjA 407 64.70 1cb6A 691 65.41 c.94.1.2,c.94.1.2 35840,35841 2nliA 368 66.12 1jvsA 400 66.32 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 2rdxA 379 66.50 1kfcA 268 67.48 c.1.2.4 77371 2gffA 106 69.25 1yadA 221 71.30 1geqA 248 71.66 c.1.2.4 28589 3c3pA 210 72.05 1g8sA 230 73.00 c.66.1.3 90507 3gd6A 391 73.99 1vhcA 224 74.06 c.1.10.1 100661 3kp1A 763 74.64 2rexB 197 76.09 2pqmA 343 77.17 2i2xB 258 77.24 1vr5A 547 77.70 c.94.1.1 120437 1b0lA 691 78.22 c.94.1.2,c.94.1.2 35847,35848 3l0gA 300 78.28 3lm8A 222 79.21 1o6cA 388 79.44 c.87.1.3 92565 2wa7A 245 79.95 2pmqA 377 81.15 3fcpA 381 81.27 1fwrA 213 81.46 c.1.10.1 29164 3d5jA 112 81.51 1q0qA 406 82.57 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 2nqlA 388 82.71 1o4uA 285 83.27 c.1.17.1,d.41.2.1 86624,86625 1jubA 311 83.35 c.1.4.1 90908 2dztA 248 84.14 1liiA 363 85.47 c.72.1.1 73921 2du2A 374 85.81 3gy1A 408 88.53 1nu5A 370 89.21 c.1.11.2,d.54.1.1 92183,92184